View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_34 (Length: 339)
Name: NF9778_low_34
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 34505022 - 34505341
Alignment:
| Q |
1 |
gttgtcttcgatcctaacgttcgtagatgaatctgttaagaaggcgaaaaatgggaaaatcaagcagtggttagtaatacagtacatgtaaattgtaatt |
100 |
Q |
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| T |
34505022 |
gttgtcttcgatcctaacgttcgtagatgaatctgttaagaaggcgaaaaatggaaaaatcaagcagtggttagtaatacagtacatgtaaattgtaatt |
34505121 |
T |
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| Q |
101 |
gtacagtttttaatatgaatatcataatttcaattacttaaagctaaataaatacaatctataaacataaagtacgaagcaaacaaattttatgtcattg |
200 |
Q |
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| T |
34505122 |
gtacagtttttaatatgaatatcataatttcaattacttaaagctaaataaatacaatctataaacataaagtacgaagcaaacaaattttatgtcattg |
34505221 |
T |
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| Q |
201 |
ttagatacaaatagagtatatcttgtatctcaannnnnnnaaatactcatgtgaatattatggaataaattattacctgggtctattccatctgtgtttg |
300 |
Q |
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| T |
34505222 |
ttagatacaaatagagtatatcttgtatctcaatttttttaaatactcatgtgattattatggaataaattattacctgggtctattccatctgtgtttg |
34505321 |
T |
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| Q |
301 |
gagagtctactggtgcaaga |
320 |
Q |
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| T |
34505322 |
gagagtctactggtgcaaga |
34505341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 45078620 - 45078666
Alignment:
| Q |
274 |
tacctgggtctattccatctgtgtttggagagtctactggtgcaaga |
320 |
Q |
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| T |
45078620 |
tacctgggtttattccatctgtgtttggagagtctactggtgcaaga |
45078666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 45078477 - 45078535
Alignment:
| Q |
1 |
gttgtcttcgatcctaacgttcgtagatgaatctgttaagaaggcgaaaaatgggaaaa |
59 |
Q |
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| T |
45078477 |
gttgtcttcaattctaacgtttgtacatgagtctgttaagaaggggaaaaatgggaaaa |
45078535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 45082923 - 45082971
Alignment:
| Q |
272 |
attacctgggtctattccatctgtgtttggagagtctactggtgcaaga |
320 |
Q |
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| T |
45082923 |
attacctgggtctatgccatctgtgtttggaacgtccactggtgcaaga |
45082971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 45067901 - 45067949
Alignment:
| Q |
272 |
attacctgggtctattccatctgtgtttggagagtctactggtgcaaga |
320 |
Q |
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|||||| |||||||| ||||||||||||||| ||| |||||||||||| |
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| T |
45067901 |
attaccagggtctatgccatctgtgtttggaacgtccactggtgcaaga |
45067949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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