View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9778_low_35 (Length: 337)

Name: NF9778_low_35
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9778_low_35
NF9778_low_35
[»] chr4 (28 HSPs)
chr4 (159-330)||(7389146-7389317)
chr4 (1-99)||(13924793-13924891)
chr4 (13-99)||(13925611-13925697)
chr4 (1-99)||(1053932-1054030)
chr4 (21-95)||(18363623-18363697)
chr4 (21-95)||(36599231-36599305)
chr4 (51-99)||(14527576-14527624)
chr4 (52-99)||(24666129-24666176)
chr4 (57-99)||(34451443-34451485)
chr4 (52-100)||(25725809-25725857)
chr4 (55-99)||(34450815-34450859)
chr4 (9-97)||(53778373-53778461)
chr4 (52-99)||(25055109-25055156)
chr4 (102-143)||(7389336-7389377)
chr4 (51-99)||(6056999-6057047)
chr4 (51-99)||(26354232-26354280)
chr4 (52-100)||(35605990-35606038)
chr4 (51-99)||(51387125-51387173)
chr4 (51-98)||(20143280-20143327)
chr4 (24-99)||(34941502-34941577)
chr4 (69-99)||(18362935-18362965)
chr4 (21-99)||(24666822-24666900)
chr4 (69-99)||(36599961-36599991)
chr4 (51-97)||(38519187-38519233)
chr4 (50-99)||(51386456-51386505)
chr4 (55-100)||(52129420-52129465)
chr4 (55-99)||(42792775-42792819)
chr4 (55-99)||(47157383-47157427)
[»] chr8 (16 HSPs)
chr8 (1-99)||(27243446-27243544)
chr8 (1-99)||(27255021-27255119)
chr8 (13-99)||(42094706-42094792)
chr8 (22-98)||(22632323-22632399)
chr8 (19-99)||(42094009-42094089)
chr8 (52-99)||(22632969-22633016)
chr8 (51-101)||(26847721-26847771)
chr8 (47-99)||(5434032-5434084)
chr8 (23-99)||(26847097-26847173)
chr8 (52-99)||(16911047-16911094)
chr8 (51-100)||(4402287-4402336)
chr8 (22-99)||(35399914-35399991)
chr8 (49-104)||(36403023-36403078)
chr8 (61-99)||(9277792-9277830)
chr8 (51-99)||(1597022-1597070)
chr8 (48-104)||(36402196-36402252)
[»] chr3 (25 HSPs)
chr3 (9-99)||(47571897-47571987)
chr3 (19-100)||(47571195-47571276)
chr3 (51-103)||(15287563-15287615)
chr3 (57-103)||(33761966-33762012)
chr3 (57-99)||(49349676-49349718)
chr3 (21-99)||(53242666-53242744)
chr3 (52-100)||(24511993-24512041)
chr3 (52-99)||(20807937-20807984)
chr3 (51-98)||(54308454-54308501)
chr3 (52-98)||(9830573-9830619)
chr3 (57-99)||(53344747-53344789)
chr3 (51-99)||(3584005-3584053)
chr3 (51-99)||(24515013-24515061)
chr3 (55-99)||(47809117-47809161)
chr3 (55-99)||(53344017-53344061)
chr3 (52-99)||(4706957-4707004)
chr3 (48-99)||(14746041-14746092)
chr3 (52-99)||(20808608-20808655)
chr3 (48-99)||(41419616-41419667)
chr3 (49-104)||(43454159-43454214)
chr3 (60-99)||(47808362-47808401)
chr3 (52-99)||(49350271-49350318)
chr3 (52-99)||(52924434-52924481)
chr3 (49-99)||(43453439-43453489)
chr3 (51-99)||(18745370-18745418)
[»] chr1 (20 HSPs)
chr1 (1-98)||(4060000-4060097)
chr1 (21-104)||(26240841-26240924)
chr1 (17-87)||(4058886-4058956)
chr1 (51-99)||(12449312-12449360)
chr1 (52-99)||(26240114-26240161)
chr1 (57-99)||(16449555-16449597)
chr1 (57-99)||(16459129-16459171)
chr1 (55-99)||(33357733-33357777)
chr1 (51-99)||(50657141-50657189)
chr1 (52-99)||(24847783-24847830)
chr1 (52-99)||(24848427-24848474)
chr1 (49-100)||(31116682-31116733)
chr1 (51-94)||(34026970-34027013)
chr1 (52-99)||(43552993-43553040)
chr1 (49-99)||(31109239-31109289)
chr1 (49-99)||(43552112-43552162)
chr1 (58-95)||(14166914-14166951)
chr1 (52-101)||(51547590-51547639)
chr1 (48-96)||(5491333-5491381)
chr1 (55-99)||(27746162-27746206)
[»] chr5 (21 HSPs)
chr5 (9-104)||(35524835-35524930)
chr5 (10-99)||(33087425-33087514)
chr5 (54-99)||(40372163-40372208)
chr5 (19-99)||(33086729-33086809)
chr5 (21-104)||(24565568-24565651)
chr5 (21-104)||(24606604-24606687)
chr5 (51-99)||(39937906-39937954)
chr5 (9-100)||(4095111-4095201)
chr5 (48-99)||(35524122-35524173)
chr5 (57-99)||(2029053-2029095)
chr5 (58-100)||(20476123-20476165)
chr5 (50-99)||(23253485-23253534)
chr5 (51-99)||(16195129-16195177)
chr5 (51-99)||(29594906-29594954)
chr5 (52-100)||(38129125-38129173)
chr5 (51-99)||(39466885-39466933)
chr5 (60-99)||(27345928-27345967)
chr5 (52-98)||(15561411-15561457)
chr5 (54-99)||(4082993-4083038)
chr5 (52-100)||(29595595-29595643)
chr5 (52-100)||(38129844-38129892)
[»] chr7 (30 HSPs)
chr7 (47-102)||(41965773-41965828)
chr7 (52-99)||(28007157-28007204)
chr7 (9-99)||(41617192-41617282)
chr7 (51-97)||(44876934-44876980)
chr7 (48-104)||(767963-768019)
chr7 (52-99)||(41358972-41359019)
chr7 (49-99)||(24874576-24874626)
chr7 (21-99)||(36611464-36611542)
chr7 (51-100)||(3314954-3315003)
chr7 (54-99)||(46491691-46491736)
chr7 (55-99)||(767136-767180)
chr7 (51-99)||(35892303-35892351)
chr7 (47-99)||(41965112-41965164)
chr7 (55-99)||(42818557-42818601)
chr7 (52-99)||(3849597-3849644)
chr7 (52-99)||(28007814-28007861)
chr7 (51-94)||(36611556-36611599)
chr7 (52-99)||(41358311-41358358)
chr7 (52-99)||(44120358-44120405)
chr7 (57-99)||(1512566-1512608)
chr7 (51-101)||(3850366-3850416)
chr7 (57-99)||(17114145-17114187)
chr7 (51-101)||(30581266-30581316)
chr7 (48-102)||(33261410-33261464)
chr7 (52-102)||(34807925-34807975)
chr7 (48-102)||(41617978-41618032)
chr7 (58-99)||(3315470-3315511)
chr7 (51-88)||(17114846-17114883)
chr7 (9-98)||(38815994-38816083)
chr7 (69-97)||(40426853-40426881)
[»] chr2 (15 HSPs)
chr2 (52-102)||(7754968-7755018)
chr2 (22-100)||(44987510-44987588)
chr2 (52-99)||(30201989-30202036)
chr2 (22-101)||(44986810-44986889)
chr2 (51-99)||(1141300-1141348)
chr2 (51-99)||(20606921-20606969)
chr2 (51-99)||(29387424-29387472)
chr2 (57-104)||(127741-127788)
chr2 (48-99)||(4716870-4716921)
chr2 (68-99)||(10365524-10365555)
chr2 (52-99)||(24394886-24394933)
chr2 (51-100)||(44296859-44296908)
chr2 (51-99)||(127033-127081)
chr2 (51-99)||(10173936-10173984)
chr2 (55-99)||(18537497-18537541)
[»] chr6 (5 HSPs)
chr6 (27-99)||(16718970-16719042)
chr6 (49-99)||(2138477-2138527)
chr6 (49-99)||(10966378-10966428)
chr6 (51-99)||(34423374-34423422)
chr6 (51-99)||(34423571-34423619)
[»] scaffold0627 (1 HSPs)
scaffold0627 (51-99)||(6464-6512)
[»] scaffold0219 (1 HSPs)
scaffold0219 (1-97)||(8349-8443)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 159 - 330
Target Start/End: Complemental strand, 7389317 - 7389146
Alignment:
Q  159 atcattttgagcagttcgattgaaaactaacacgaacatcccacttacattccgctgccgaatttcgcttcgcagaaaatggaagaagaaaacaacgtat 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7389317 atcattttgagcagttcgattgaaaactaacacgaacatcccacttacattccgctgccgaatttggcttcgcagaaaatggaagaagaaaacaacgtat 7389218  T
Q  259 tcaaagatgaacaagaacaagaaatcaatgaatcctttgtttgctgcgtttgcttgtaagtctcctttgctt 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7389217 tcaaagatgaacaagaacaagaaatcaatgaatcctttgtttgctgcgtttgcttgtaagtctcctttgctt 7389146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 13924891 - 13924793
Alignment:
Q  1 ttgtttgcaacaaatatgatccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||| ||||||||||||| ||||||||||||  ||||||| | | |||||||||||||||||||| | |||||||| ||||||||||||||||||||    
T  13924891 ttgtttccaacaaatatgatgcattgattaaattcaaccgtacttttttcgtggtccaccggtgagggatttaattgagccctcaccctagaatccacc 13924793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 13925611 - 13925697
Alignment:
Q  13 aatatgatccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||||||||||| ||||||||||||| |||| ||||||||||||||||| ||||| ||||||||||||  |||||||||||    
T  13925611 aatatgatccattgattagatctaaccgtaatttctttgtggtccaccggtgagggacttagttgatccctcactttagaatccacc 13925697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 1053932 - 1054030
Alignment:
Q  1 ttgtttgcaacaaatatgatccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||||||||||||||||||||||||||  ||||||||| ||||| |||| ||| | |||||   ||||||||||||||| | |||||||||||    
T  1053932 ttgtttgcaacaaatatgatccattgattaaattcaaccgtaatttcttcatggttcactgatgaggggtttaattgatccctcatcttagaatccacc 1054030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 18363623 - 18363697
Alignment:
Q  21 ccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatc 95  Q
    ||||||||| |||| ||  ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18363623 ccattgattcaatcgaatggtattttcttcgtggtccaccggtgaggaacttaattgaaccctcaccctagaatc 18363697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 36599305 - 36599231
Alignment:
Q  21 ccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatc 95  Q
    ||||||||| |||| ||  ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36599305 ccattgattcaatcgaatggtattttcttcgtggtccaccggtgaggaacttaattgaaccctcaccctagaatc 36599231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 14527576 - 14527624
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  14527576 gtggttcaccggtgagggacttaattgatccctcaccctagaatccacc 14527624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 24666176 - 24666129
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||    
T  24666176 tggttcaccggtgagggacttaattgatccctcaccctagaatccacc 24666129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 34451443 - 34451485
Alignment:
Q  57 caccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  34451443 caccggtgaggtacttaattgatccctcaccctagaatccacc 34451485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 25725809 - 25725857
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccaccc 100  Q
    |||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  25725809 tggtccaccggtgagggacttaattgctccctcaccctagactccaccc 25725857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 34450859 - 34450815
Alignment:
Q  55 tccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||    
T  34450859 tccaccggtgagggacttaattgatccctcaccctagaattcacc 34450815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 53778373 - 53778461
Alignment:
Q  9 aacaaatatgatccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatcca 97  Q
    |||||||  |||||||| ||| ||||||||  || |  ||||||||||||||||||||| |||||| ||  ||||||||||||||||||    
T  53778373 aacaaatcggatccattcatttaatctaacgatatttccttcgtggtccaccggtgagggacttaaatggaccctcaccctagaatcca 53778461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 25055156 - 25055109
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||  |||||||||||||||| ||||||||||||||||||||    
T  25055156 tggtccaccaatgaggaacttaattgaaccctcaccctagaatccacc 25055109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 7389377 - 7389336
Alignment:
Q  102 attcaaccttttaaacagtaaactaagctgaatacaaccgca 143  Q
    ||||||||||||||| ||||||||||||||||| ||||||||    
T  7389377 attcaaccttttaaatagtaaactaagctgaatccaaccgca 7389336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 6056999 - 6057047
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||||||| ||||| | || ||||||||||||||||||||    
T  6056999 gtggtccaccggtgagggacttagtagaaccctcaccctagaatccacc 6057047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 26354232 - 26354280
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||| |||||| |||||||||| |||||||||||||| |||||    
T  26354232 gtggtccacctgtgagggacttaattgaaccctcaccctagaacccacc 26354280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 35606038 - 35605990
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccaccc 100  Q
    |||||||||  ||||| ||||||||| ||||||||||||||||||||||    
T  35606038 tggtccaccaatgagggacttaattgctccctcaccctagaatccaccc 35605990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 51387125 - 51387173
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||| ||||||||||| || ||||||||||||||||||| ||||||||    
T  51387125 gtggttcaccggtgagggacgtaattgatccctcaccctataatccacc 51387173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 20143327 - 20143280
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccac 98  Q
    ||||| ||||||||||| ||||| |||| |||||||||||||||||||    
T  20143327 gtggtacaccggtgagggacttagttgagccctcaccctagaatccac 20143280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 34941577 - 34941502
Alignment:
Q  24 ttgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||| |||| ||| ||| | ||||| || |||||  |||||| |||||||||| ||||||||||||||||||||    
T  34941577 ttgattcaatcaaacggtattttcttcatgatccactagtgagggacttaattgaaccctcaccctagaatccacc 34941502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 99
Target Start/End: Complemental strand, 18362965 - 18362935
Alignment:
Q  69 acttaattgatccctcaccctagaatccacc 99  Q
    |||||||||||||||||||||||||||||||    
T  18362965 acttaattgatccctcaccctagaatccacc 18362935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 24666822 - 24666900
Alignment:
Q  21 ccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||| |||| ||| ||| | | ||| ||||||||| | |||| |||||||||| ||||||||||| ||||||||    
T  24666822 ccattgattcaatcaaacggtatttttttcatggtccaccagggagggacttaattgaaccctcaccctataatccacc 24666900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 99
Target Start/End: Original strand, 36599961 - 36599991
Alignment:
Q  69 acttaattgatccctcaccctagaatccacc 99  Q
    |||||||||||||||||||||||||||||||    
T  36599961 acttaattgatccctcaccctagaatccacc 36599991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 38519187 - 38519233
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatcca 97  Q
    ||||| ||||||||||| ||||||||| ||| |||||||||||||||    
T  38519187 gtggtacaccggtgagggacttaattgctccttcaccctagaatcca 38519233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 51386505 - 51386456
Alignment:
Q  50 cgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||| ||| ||||||| |||||||||| ||||||||||| ||||||||    
T  51386505 cgtggttcactggtgagggacttaattgaaccctcaccctaaaatccacc 51386456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 52129465 - 52129420
Alignment:
Q  55 tccaccggtgaggaacttaattgatccctcaccctagaatccaccc 100  Q
    |||||| |||||| |||||||||| |||||||| ||||||||||||    
T  52129465 tccaccagtgagggacttaattgaaccctcaccttagaatccaccc 52129420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 42792819 - 42792775
Alignment:
Q  55 tccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||| |||||||| |||||||||  ||||||||||||||||||||    
T  42792819 tccatcggtgagggacttaattggaccctcaccctagaatccacc 42792775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 47157383 - 47157427
Alignment:
Q  55 tccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||| | |||||||| ||||||||||||||| ||||    
T  47157383 tccaccggtgagggatttaattgaaccctcaccctagaattcacc 47157427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 27243544 - 27243446
Alignment:
Q  1 ttgtttgcaacaaatatgatccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||| ||||||||||||||||||||||  ||| ||||| |||||||||||||||||||||| |||||||||||||||| || || ||||||||    
T  27243544 ttgtttgcaataaatatgatccattgattaaattcaactgtaatttcttcgtggtccaccggtgagggacttaattgatccctcgccttataatccacc 27243446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 27255119 - 27255021
Alignment:
Q  1 ttgtttgcaacaaatatgatccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||| ||||||||||||||||||||||  ||| ||||| |||||||||||||||||||||| |||||||||||||||| || || ||||||||    
T  27255119 ttgtttgcaataaatatgatccattgattaaattcaactgtaatttcttcgtggtccaccggtgagggacttaattgatccctcgccttataatccacc 27255021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 42094706 - 42094792
Alignment:
Q  13 aatatgatccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||||||||||||||| ||| ||||| ||||| || | || |||||||| |||||||||||||||||||||||||| ||||    
T  42094706 aatatgatccattgattaaatccaactgtaatttcttcatgcttcatcggtgagggacttaattgatccctcaccctagaattcacc 42094792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 22632399 - 22632323
Alignment:
Q  22 cattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccac 98  Q
    |||| |||||||||||| ||  ||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  22632399 cattaattaaatctaacggttttattttcatggtccaccggtgagggacttaattgatccctcaccctagaatccac 22632323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 42094089 - 42094009
Alignment:
Q  19 atccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||||||||  ||| ||||| ||||| || | ||||||||||| |||||||||||||||||||||||||||||||    
T  42094089 atccattgattaaattcaactgtaatttcttcatgcttcaccggtgagggacttaattgatccctcaccctagaatccacc 42094009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 22632969 - 22633016
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  22632969 tggtccaccggtgagggacttaattgatccctcaccctagaatccacc 22633016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 26847721 - 26847771
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccaccca 101  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  26847721 gtggttcaccggtgaggaacttaattgatccctcatcctagaatccaccca 26847771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 5434084 - 5434032
Alignment:
Q  47 cttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||||||||| | |||||||||  ||||||||||||||||||||    
T  5434084 cttcgtggtccaccggtgaaggacttaattggaccctcaccctagaatccacc 5434032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 26847173 - 26847097
Alignment:
Q  23 attgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||||||||  ||| | | | |||||| ||||||||||| |||||||||  ||||||||||||||||||||    
T  26847173 attgattaaatctaatggtattttttccgtggttcaccggtgagggacttaattggaccctcaccctagaatccacc 26847097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 16911047 - 16911094
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  16911047 tggtacaccggtgagggacttaattgagccctcaccctagaatccacc 16911094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 4402287 - 4402336
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccaccc 100  Q
    ||||| ||||||||||| ||||||| || |||||||||||||||||||||    
T  4402287 gtggttcaccggtgagggacttaatagaaccctcaccctagaatccaccc 4402336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 35399914 - 35399991
Alignment:
Q  22 cattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||| |||||||||||| ||  ||| ||  |||||||||||||||| | || |||||||||||| |||||||||||||    
T  35399914 cattaattaaatctaacggtcttatttttttggtccaccggtgagggatttgattgatccctcatcctagaatccacc 35399991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 36403023 - 36403078
Alignment:
Q  49 tcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacccaatt 104  Q
    ||||||||||||||||||| || ||||||  ||||||| |||||||||||| ||||    
T  36403023 tcgtggtccaccggtgagggacctaattggaccctcactctagaatccaccaaatt 36403078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 9277792 - 9277830
Alignment:
Q  61 ggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  9277792 ggtgagggacttaattgctccctcaccctagaatccacc 9277830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 1597070 - 1597022
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||| | |||||||||||||||| || |||||| |||||||||||    
T  1597070 gtggtccatcagtgaggaacttaattgctcactcaccttagaatccacc 1597022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 36402252 - 36402196
Alignment:
Q  48 ttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacccaatt 104  Q
    ||||||||||||||||| || || ||||||  ||||||||||| |||||||| ||||    
T  36402252 ttcgtggtccaccggtgtgggacctaattggaccctcaccctaaaatccaccaaatt 36402196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 47571897 - 47571987
Alignment:
Q  9 aacaaatatgatccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||||||| |||||||| ||| ||||| ||||| || | ||||||||||| |||||||||||||||||||||||||| ||||    
T  47571897 aacaaatatgatccattaattaaatccaactgtaatttcttcatgtttcaccggtgagggacttaattgatccctcaccctagaattcacc 47571987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 47571276 - 47571195
Alignment:
Q  19 atccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccaccc 100  Q
    |||||||||||||||  ||| ||||| ||||| || | ||||||||||| ||||||||||||||||||||||||||||||||    
T  47571276 atccattgattaaattcaactgtaatttcttcatgcttcaccggtgagggacttaattgatccctcaccctagaatccaccc 47571195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 15287615 - 15287563
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacccaat 103  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||||||    
T  15287615 gtggtccaccggtgagggacttaattggaccctcaccctagaatccacccaat 15287563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 33762012 - 33761966
Alignment:
Q  57 caccggtgaggaacttaattgatccctcaccctagaatccacccaat 103  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||    
T  33762012 caccggtgaggaacttaatagagccctcaccctagaatccacccaat 33761966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 49349718 - 49349676
Alignment:
Q  57 caccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  49349718 caccggtgagggacttaattgatccctcaccctagaatccacc 49349676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 53242744 - 53242666
Alignment:
Q  21 ccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||| |||| ||  ||| | |||||||||||||||| ||||| ||||||||||| |||||||||| ||||||||    
T  53242744 ccattgattcaatcaaatggtattttcttcgtggtccaccgatgagggacttaattgattcctcaccctataatccacc 53242666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 24512041 - 24511993
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccaccc 100  Q
    |||||||||||||||| ||||||||| |||||||||||| |||||||||    
T  24512041 tggtccaccggtgagggacttaattgctccctcaccctaaaatccaccc 24511993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 20807984 - 20807937
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  20807984 tggtacaccggtgagggacttaattgaaccctcaccctagaatccacc 20807937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 54308501 - 54308454
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccac 98  Q
    ||||| ||||||||||| |||||||||| |||||||||||||||||||    
T  54308501 gtggttcaccggtgagggacttaattgaaccctcaccctagaatccac 54308454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 9830619 - 9830573
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccac 98  Q
    |||||||||||||||| |||||||||| ||||||||| |||||||||    
T  9830619 tggtccaccggtgagggacttaattgaaccctcacccgagaatccac 9830573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 53344747 - 53344789
Alignment:
Q  57 caccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||| |||| ||||||||||||||||||||||||||    
T  53344747 caccggtgagggacttgattgatccctcaccctagaatccacc 53344789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 3584053 - 3584005
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||| ||||||||||| | ||||||| |||||||||||||||||||||    
T  3584053 gtggtacaccggtgagggatttaattgctccctcaccctagaatccacc 3584005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 24515013 - 24515061
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||||||| |||||||   |||||||||||||||||||||    
T  24515013 gtggtccaccggtgagggacttaataactccctcaccctagaatccacc 24515061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 47809117 - 47809161
Alignment:
Q  55 tccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||||    
T  47809117 tccaccggtgagggacttgattgatccctcaccccagaatccacc 47809161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 53344061 - 53344017
Alignment:
Q  55 tccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||| |||| |||||||||||| |||||||||||||    
T  53344061 tccaccggtgagggacttgattgatccctcatcctagaatccacc 53344017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 4706957 - 4707004
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||| ||||||||||| ||||||| || ||||||||||||||||||||    
T  4706957 tggtacaccggtgagggacttaatagaaccctcaccctagaatccacc 4707004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 14746092 - 14746041
Alignment:
Q  48 ttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||||| |||| | |||||||  ||||||||||||||||||||    
T  14746092 ttcgtggtccaccggggagggatttaattggaccctcaccctagaatccacc 14746041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 20808608 - 20808655
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||| ||||||||||| ||||| |||| ||||||||||||||||||||    
T  20808608 tggtacaccggtgagggacttacttgaaccctcaccctagaatccacc 20808655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 41419616 - 41419667
Alignment:
Q  48 ttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||||||||||||| || ||||||  ||||||| ||||||||||||    
T  41419616 ttcgtggtccaccggtgagggacctaattggcccctcacactagaatccacc 41419667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 43454159 - 43454214
Alignment:
Q  49 tcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacccaatt 104  Q
    ||||||||||| ||||||| || ||||||  |||||||||||||||||||| ||||    
T  43454159 tcgtggtccacaggtgagggacctaattggaccctcaccctagaatccaccgaatt 43454214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 47808401 - 47808362
Alignment:
Q  60 cggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  47808401 cggtgagggacttgattgatccctcaccctagaatccacc 47808362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 49350271 - 49350318
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||| |||||| |||| |||||||||| ||||||||||||||||||||    
T  49350271 tggttcaccggcgagggacttaattgaaccctcaccctagaatccacc 49350318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 52924434 - 52924481
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||| ||||||||||| ||||||||| ||||||||| |||||||||||    
T  52924434 tggtgcaccggtgagggacttaattgctccctcaccttagaatccacc 52924481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 43453489 - 43453439
Alignment:
Q  49 tcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||| |||||||| | |||||||  ||||||||||||||||||||    
T  43453489 tcgtggtccagcggtgagggatttaattggaccctcaccctagaatccacc 43453439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 18745370 - 18745418
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||||| ||||    
T  18745370 gtggtgcaccggtgagggacttgattgaaccctcaccctagaattcacc 18745418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 4060000 - 4060097
Alignment:
Q  1 ttgtttgcaacaaatatgatccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccac 98  Q
    |||||| ||||||||||||| ||||||||||||| || |||| | |||||||||||||||||||| | | |||||||| |||||| ||||||||||||    
T  4060000 ttgtttccaacaaatatgatgcattgattaaatccaatcgtactttcttcgtggtccaccggtgacggatttaattgagccctcatcctagaatccac 4060097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 26240841 - 26240924
Alignment:
Q  21 ccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacccaatt 104  Q
    ||||||||| |||| ||| ||| | ||||| |||||||||||||||| |||||||||| |||||||||||||||||||| ||||    
T  26240841 ccattgattcaatcaaacggtattttcttcatggtccaccggtgagggacttaattgaaccctcaccctagaatccacctaatt 26240924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 4058956 - 4058886
Alignment:
Q  17 tgatccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcacc 87  Q
    |||||||||||||| ||||||||||||| |||| ||||||||||| ||||| ||||| |||||||||||||    
T  4058956 tgatccattgattagatctaaccgtaatttctttgtggtccaccgatgagggacttagttgatccctcacc 4058886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 12449312 - 12449360
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  12449312 gtggtccaccggtgagggacttaattgatccctcaccctaaaatccacc 12449360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 26240161 - 26240114
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||    
T  26240161 tggttcaccggtgagggacttaattgatccctcaccctagaatccacc 26240114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 16449597 - 16449555
Alignment:
Q  57 caccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||| |||||||||| ||||||||||||||||||||    
T  16449597 caccggtgagggacttaattgaaccctcaccctagaatccacc 16449555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 16459171 - 16459129
Alignment:
Q  57 caccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||| |||||||||| ||||||||||||||||||||    
T  16459171 caccggtgagggacttaattgaaccctcaccctagaatccacc 16459129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 33357733 - 33357777
Alignment:
Q  55 tccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||| |||||  ||||||||||||||||||||||||    
T  33357733 tccaccggtgagggacttatctgatccctcaccctagaatccacc 33357777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 50657141 - 50657189
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||||||| ||||||||| |||||| || |||||||||||    
T  50657141 gtggtccaccggtgagggacttaattgctccctcgccttagaatccacc 50657189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 24847830 - 24847783
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||| ||||||||||| ||||||| || ||||||||||||||||||||    
T  24847830 tggtacaccggtgagggacttaatagaaccctcaccctagaatccacc 24847783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 24848427 - 24848474
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||| ||||||||||| ||||||| || ||||||||||||||||||||    
T  24848427 tggtacaccggtgagggacttaatagaaccctcaccctagaatccacc 24848474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 31116682 - 31116733
Alignment:
Q  49 tcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccaccc 100  Q
    |||| |||||||||||||| || ||||||  |||||||||||||||||||||    
T  31116682 tcgtagtccaccggtgagggacctaattggaccctcaccctagaatccaccc 31116733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 34026970 - 34027013
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaat 94  Q
    ||||||||||||||||| |||||||||||| ||||| |||||||    
T  34026970 gtggtccaccggtgagggacttaattgatctctcactctagaat 34027013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 43552993 - 43553040
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||| |||||| | |||||||||||||||||||||| ||||||||    
T  43552993 tggtccatcggtgaaggacttaattgatccctcaccctataatccacc 43553040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 31109289 - 31109239
Alignment:
Q  49 tcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||| |||||||||||||| || ||||||  ||||||||||||||||||||    
T  31109289 tcgtagtccaccggtgagggacctaattggaccctcaccctagaatccacc 31109239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 43552162 - 43552112
Alignment:
Q  49 tcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||| ||||||||||||| |||||||   |||||||||||||||||||    
T  43552162 tcgtggttcaccggtgaggaatttaattggatcctcaccctagaatccacc 43552112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 14166914 - 14166951
Alignment:
Q  58 accggtgaggaacttaattgatccctcaccctagaatc 95  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  14166914 accggtgagggacttaattgagccctcaccctagaatc 14166951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 51547639 - 51547590
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccaccca 101  Q
    |||||||||||| ||| |||||||| | || |||||||||||||||||||    
T  51547639 tggtccaccggtaagggacttaattaaaccatcaccctagaatccaccca 51547590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 5491333 - 5491381
Alignment:
Q  48 ttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatcc 96  Q
    |||||||||||||||||||| || ||||||  |||||| ||||||||||    
T  5491333 ttcgtggtccaccggtgagggacctaattggaccctcatcctagaatcc 5491381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 27746162 - 27746206
Alignment:
Q  55 tccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||| ||||||| |||||||||| ||||||| ||||||||||||    
T  27746162 tccactggtgagggacttaattgaaccctcacgctagaatccacc 27746206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 35524835 - 35524930
Alignment:
Q  9 aacaaatatgatccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacccaatt 104  Q
    ||||||| |||| |||| | |||||| ||| ||||| | ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  35524835 aacaaatctgattcattcaataaatccaactgtaattttttcatggtccaccggtgagaaacttaattgatccctcaccctagaatccaccaaatt 35524930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 33087425 - 33087514
Alignment:
Q  10 acaaatatgatccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||||||||||||||| ||| ||||| ||||| || | ||||||||||| |||| |||||||||||| |||||||| ||||    
T  33087425 acaaatatgatccattgattaaatccaactgtaatttcttcatgcttcaccggtgagggacttgattgatccctcatcctagaattcacc 33087514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 40372163 - 40372208
Alignment:
Q  54 gtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  40372163 gtccaccggtgaggaacttaattgaaccctcaccctagaatccacc 40372208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 33086809 - 33086729
Alignment:
Q  19 atccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||||||||  ||| ||||| ||||| || | ||||||||| | ||||||||||||||||| |||||||||||||    
T  33086809 atccattgattaaattcaactgtaatttcttcatgcttcaccggtgaaggacttaattgatccctcatcctagaatccacc 33086729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 24565651 - 24565568
Alignment:
Q  21 ccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacccaatt 104  Q
    ||||| |||||||||||  ||| | | ||| |||||||||||||||| | |||||||| |||||||||||||||||||| ||||    
T  24565651 ccattaattaaatctaatggtattttgttcatggtccaccggtgagggatttaattgaaccctcaccctagaatccaccgaatt 24565568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 24606687 - 24606604
Alignment:
Q  21 ccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacccaatt 104  Q
    ||||| |||||||||||  ||| | | ||| |||||||||||||||| | |||||||| |||||||||||||||||||| ||||    
T  24606687 ccattaattaaatctaatggtattttgttcatggtccaccggtgagggatttaattgaaccctcaccctagaatccaccgaatt 24606604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 39937906 - 39937954
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||    
T  39937906 gtggtccaccggtgagggacttaactgaaccctcaccctagaatccacc 39937954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 4095201 - 4095111
Alignment:
Q  9 aacaaatatgatccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccaccc 100  Q
    ||||||| || |||||| | |||||| |||  |||| | ||| |||||||||||||||  ||||||||||| ||||||||||||||||||||    
T  4095201 aacaaatctggtccattcaataaatccaactctaattttttcatggtccaccggtgagagacttaattgat-cctcaccctagaatccaccc 4095111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 35524173 - 35524122
Alignment:
Q  48 ttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||||||||||||| |||||||||| | |||| |||||||||||||    
T  35524173 ttcgtggtccaccggtgagggacttaattgaactctcatcctagaatccacc 35524122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 2029053 - 2029095
Alignment:
Q  57 caccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||| |||||||||| ||||||||||||||||||||    
T  2029053 caccggtgagggacttaattgagccctcaccctagaatccacc 2029095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 20476123 - 20476165
Alignment:
Q  58 accggtgaggaacttaattgatccctcaccctagaatccaccc 100  Q
    |||||||||| |||||||||||||||||||||| |||||||||    
T  20476123 accggtgagggacttaattgatccctcaccctaaaatccaccc 20476165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 23253485 - 23253534
Alignment:
Q  50 cgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||| ||||||||||| |||||||||  ||||||||||||||||||||    
T  23253485 cgtggttcaccggtgagggacttaattggaccctcaccctagaatccacc 23253534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 16195129 - 16195177
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||| |||| |||| | |||||||||||||||||||||||||||||||    
T  16195129 gtggtacaccagtgatggacttaattgatccctcaccctagaatccacc 16195177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 29594954 - 29594906
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||| || |||||| |||||||||||| ||||||||||||||||||||    
T  29594954 gtggtacatcggtgaagaacttaattgaaccctcaccctagaatccacc 29594906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 38129173 - 38129125
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccaccc 100  Q
    |||| ||||||||||| ||||||||| ||||||||| ||||||||||||    
T  38129173 tggtacaccggtgagggacttaattgctccctcaccttagaatccaccc 38129125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 39466933 - 39466885
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||||||| |||||||||  ||||||||||||||| ||||    
T  39466933 gtggtccaccggtgagggacttaattggaccctcaccctagaattcacc 39466885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 27345928 - 27345967
Alignment:
Q  60 cggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  27345928 cggtgagggacttaattgaaccctcaccctagaatccacc 27345967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 15561457 - 15561411
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccac 98  Q
    |||||||||||||||| ||||| | || |||||||||||||||||||    
T  15561457 tggtccaccggtgagggacttagtagagccctcaccctagaatccac 15561411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 4083038 - 4082993
Alignment:
Q  54 gtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||| ||||| ||||||| | |||||||||||||||||||||    
T  4083038 gtccaccgatgagggacttaatagctccctcaccctagaatccacc 4082993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 29595595 - 29595643
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccaccc 100  Q
    |||| ||| ||||||| |||||||||| ||||||| |||||||||||||    
T  29595595 tggtacactggtgagggacttaattgaaccctcacgctagaatccaccc 29595643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 38129844 - 38129892
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccaccc 100  Q
    |||| ||||||||||| ||||||||| ||||||||| || |||||||||    
T  38129844 tggtacaccggtgagggacttaattgttccctcaccttaaaatccaccc 38129892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 41965773 - 41965828
Alignment:
Q  47 cttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacccaa 102  Q
    ||||||||||||||||||||| |||||||||  |||||||||||||||||||||||    
T  41965773 cttcgtggtccaccggtgagggacttaattggaccctcaccctagaatccacccaa 41965828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 28007204 - 28007157
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||    
T  28007204 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 28007157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 41617282 - 41617192
Alignment:
Q  9 aacaaatatgatccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||| || |||||| | |||||  ||| ||||| | ||| |||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  41617282 aacaaatctggtccattcaataaattcaactgtaattttttcatggtccaccggtgagggacttaattgatcactcactctagaatccacc 41617192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 44876934 - 44876980
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatcca 97  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||    
T  44876934 gtggtccatcggtgagggacttaattgatccctcaccctagaatcca 44876980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 767963 - 768019
Alignment:
Q  48 ttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacccaatt 104  Q
    |||||||||||||||||||| |||||||||  ||||||||||| |||||||| ||||    
T  767963 ttcgtggtccaccggtgagggacttaattggaccctcaccctaaaatccaccaaatt 768019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 41358972 - 41359019
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||| ||||| | |||||||||||||||||||||||||||||||    
T  41358972 tggtccactggtgatggacttaattgatccctcaccctagaatccacc 41359019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 24874576 - 24874626
Alignment:
Q  49 tcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||| ||||| || ||||||| ||||||||||||||||||||    
T  24874576 tcgtggtccaccgatgagggacctaattgaaccctcaccctagaatccacc 24874626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 36611464 - 36611542
Alignment:
Q  21 ccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||| |||||||||||  ||| | | ||| |||||||||||||||  | |||||||| ||||||||||||||||||||    
T  36611464 ccattaattaaatctaatggtattttgttcatggtccaccggtgagagatttaattgaaccctcaccctagaatccacc 36611542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 3315003 - 3314954
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccaccc 100  Q
    ||||| ||||||||||| |||||||||| |||||||| ||||||||||||    
T  3315003 gtggtacaccggtgagggacttaattgaaccctcaccgtagaatccaccc 3314954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 46491691 - 46491736
Alignment:
Q  54 gtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||||||| ||||| |||| ||||||||||||||||||||    
T  46491691 gtccaccggtgagggacttagttgaaccctcaccctagaatccacc 46491736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 767180 - 767136
Alignment:
Q  55 tccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||    
T  767180 tccaccggtgagggacttaattggaccctcaccctagaatccacc 767136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 35892303 - 35892351
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||| ||||||||||| | ||||||| |||||||||||||||||||||    
T  35892303 gtggtacaccggtgagggatttaattgctccctcaccctagaatccacc 35892351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 41965164 - 41965112
Alignment:
Q  47 cttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||||  ||||| |||||||||  ||||||||||||||||||||    
T  41965164 cttcgtggtccaccaatgagggacttaattggaccctcaccctagaatccacc 41965112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 42818557 - 42818601
Alignment:
Q  55 tccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||| |||||||||| ||||||||||||||| ||||    
T  42818557 tccaccggtgagggacttaattgaaccctcaccctagaattcacc 42818601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 3849644 - 3849597
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||||||||| | || |||||||||||| |||||||||||||    
T  3849644 tggtccaccggtgagggatttgattgatccctcatcctagaatccacc 3849597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 28007814 - 28007861
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||||||||| ||||||| | ||| |||||||||||||||||    
T  28007814 tggtccaccggtgagggacttaatagctccatcaccctagaatccacc 28007861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 36611599 - 36611556
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaat 94  Q
    ||||| ||||||||||| |||||||||| |||||||||||||||    
T  36611599 gtggttcaccggtgagggacttaattgaaccctcaccctagaat 36611556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 41358358 - 41358311
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||| |||||||| ||||||||||||||||| || ||||||||||    
T  41358358 tggtccatcggtgagggacttaattgatccctcatccaagaatccacc 41358311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 44120405 - 44120358
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||| ||||||||||| ||||||||| ||||||||| |||||||||||    
T  44120405 tggtacaccggtgagggacttaattgctccctcaccttagaatccacc 44120358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 1512566 - 1512608
Alignment:
Q  57 caccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||||||||| || | ||||||||||||||||||    
T  1512566 caccggtgaggaacttaatagagctctcaccctagaatccacc 1512608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 3850366 - 3850416
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccaccca 101  Q
    ||||||||||||||||| | |||||||  ||||||||||||| ||||||||    
T  3850366 gtggtccaccggtgagggatttaattggcccctcaccctagattccaccca 3850416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 17114187 - 17114145
Alignment:
Q  57 caccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||| ||||| |||||||||| ||||||||||||||||||||    
T  17114187 caccgatgagggacttaattgaaccctcaccctagaatccacc 17114145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 30581266 - 30581316
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccaccca 101  Q
    ||||| ||| ||||||| |||||||||| ||||||||||||||| ||||||    
T  30581266 gtggttcactggtgagggacttaattgaaccctcaccctagaattcaccca 30581316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 33261410 - 33261464
Alignment:
Q  48 ttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacccaa 102  Q
    ||||||||||| | |||||| |||||||||  |||||| ||||||||||||||||    
T  33261410 ttcgtggtccatcagtgagggacttaattggaccctcatcctagaatccacccaa 33261464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 34807975 - 34807925
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacccaa 102  Q
    |||||||||||||||| ||||||||| ||||||||| |||| | |||||||    
T  34807975 tggtccaccggtgagggacttaattgctccctcaccttagacttcacccaa 34807925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 41617978 - 41618032
Alignment:
Q  48 ttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacccaa 102  Q
    |||||||||||| ||||||  |||||||||  ||||||| |||||||||||||||    
T  41617978 ttcgtggtccactggtgagagacttaattggaccctcactctagaatccacccaa 41618032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 3315470 - 3315511
Alignment:
Q  58 accggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||| |||||||||| |||||||| |||||||||||    
T  3315470 accggtgagggacttaattgagccctcaccttagaatccacc 3315511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 17114846 - 17114883
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccc 88  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  17114846 gtggttcaccggtgaggaacttaattgaaccctcaccc 17114883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 38815994 - 38816083
Alignment:
Q  9 aacaaatatgatccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccac 98  Q
    ||||||||||||||||| |||||||| ||| ||||| | || ||| | |||  ||||||  ||||||| |||||||| |||| |||||||    
T  38815994 aacaaatatgatccattaattaaatcaaactgtaatttgttagtgcttcactagtgaggggcttaattaatccctcatcctaaaatccac 38816083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 97
Target Start/End: Complemental strand, 40426881 - 40426853
Alignment:
Q  69 acttaattgatccctcaccctagaatcca 97  Q
    |||||||||||||||||||||||||||||    
T  40426881 acttaattgatccctcaccctagaatcca 40426853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 7754968 - 7755018
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacccaa 102  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  7754968 tggtccaccggtgaaggacttaattgatccctcaccctagaatccacccaa 7755018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 44987510 - 44987588
Alignment:
Q  22 cattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccaccc 100  Q
    ||||||||||||  ||| ||||| ||||| || | |||| |||||  ||||||||||||||||||||||||||||||||    
T  44987510 cattgattaaattcaactgtaatttcttcatgcttcaccagtgagagacttaattgatccctcaccctagaatccaccc 44987588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 30201989 - 30202036
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||||||    
T  30201989 tggtccaccggtgagggacttaattgctccctcaccttagaatccacc 30202036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 44986889 - 44986810
Alignment:
Q  22 cattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccaccca 101  Q
    ||||||||||||  ||| ||||| | ||| || | ||||| ||||| |||||||||||||||||||||||||| ||||||    
T  44986889 cattgattaaattcaactgtaatttattcatgcttcaccgatgagggacttaattgatccctcaccctagaattcaccca 44986810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 1141348 - 1141300
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||||||| |||| |||| ||||||||| |||||||||||    
T  1141348 gtggtccaccggtgagggacttcattgctccctcaccttagaatccacc 1141300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 20606921 - 20606969
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||| ||||||||||| |||||||||| ||||||||||||||| ||||    
T  20606921 gtggttcaccggtgagggacttaattgaaccctcaccctagaattcacc 20606969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 29387472 - 29387424
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||||||||||||||| | ||||||| |||||||| ||||    
T  29387472 gtggtccaccggtgaggaacttaatagctccctcatcctagaattcacc 29387424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 127741 - 127788
Alignment:
Q  57 caccggtgaggaacttaattgatccctcaccctagaatccacccaatt 104  Q
    ||||||||| | |||||||||| |||||||||||||||||||| ||||    
T  127741 caccggtgaaggacttaattgaaccctcaccctagaatccacctaatt 127788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 4716870 - 4716921
Alignment:
Q  48 ttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||| |||| ||| |||||||  ||||||||||||||||||||    
T  4716870 ttcgtggtccaccagtgaagaatttaattggaccctcaccctagaatccacc 4716921  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 99
Target Start/End: Original strand, 10365524 - 10365555
Alignment:
Q  68 aacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||||||||||||||||||||||    
T  10365524 aacttaattgatccctcaccctagaatccacc 10365555  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 24394886 - 24394933
Alignment:
Q  52 tggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||||| ||||| |||||||||||||| ||| ||||||||||||    
T  24394886 tggtccaccgatgagggacttaattgatcccccactctagaatccacc 24394933  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 44296908 - 44296859
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccaccc 100  Q
    |||||||||| |||||| |||||||||  ||||||||||||||| |||||    
T  44296908 gtggtccaccagtgagggacttaattggaccctcaccctagaattcaccc 44296859  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 127081 - 127033
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||| | ||||| ||||| |||| ||||||||||||||||||||    
T  127081 gtggtccactgatgagggacttagttgaaccctcaccctagaatccacc 127033  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 10173984 - 10173936
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||| ||||||||||| ||||||  || ||||||||||||||||||||    
T  10173984 gtggttcaccggtgagggacttaacagaaccctcaccctagaatccacc 10173936  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 18537497 - 18537541
Alignment:
Q  55 tccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||| |||||||||| |||||| | |||||||||||    
T  18537497 tccaccggtgagggacttaattgaaccctcatcatagaatccacc 18537541  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 16718970 - 16719042
Alignment:
Q  27 attaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||  || | | ||| |||||||||||||||| ||||||||||||| |||||||||||||||||    
T  16718970 attaaatctaacgatattttgttcatggtccaccggtgagggacttaattgatccgtcaccctagaatccacc 16719042  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 2138527 - 2138477
Alignment:
Q  49 tcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||||||||| || ||||||  ||||||||||||||| ||||    
T  2138527 tcgtggtccaccggtgagggacctaattggaccctcaccctagaattcacc 2138477  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 10966378 - 10966428
Alignment:
Q  49 tcgtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||||||||||||||||| || ||||||  || |||||||||||||||||    
T  10966378 tcgtggtccaccggtgagggacctaattggaccttcaccctagaatccacc 10966428  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 34423422 - 34423374
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||| || |||||||| ||||||||| |||||||| ||||||||||||    
T  34423422 gtggtacatcggtgagggacttaattgctccctcacactagaatccacc 34423374  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 34423571 - 34423619
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    ||||| || |||||||| ||||||||| | |||||||||||||||||||    
T  34423571 gtggtacatcggtgagggacttaattgcttcctcaccctagaatccacc 34423619  T

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Target: scaffold0627 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 6512 - 6464
Alignment:
Q  51 gtggtccaccggtgaggaacttaattgatccctcaccctagaatccacc 99  Q
    |||||||| |||||||| |||||||||| |||||||||||||| |||||    
T  6512 gtggtccatcggtgagggacttaattgaaccctcaccctagaacccacc 6464  T

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Target: scaffold0219 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 8443 - 8349
Alignment:
Q  1 ttgtttgcaacaaatatgatccattgattaaatctaaccgtaatatcttcgtggtccaccggtgaggaacttaattgatccctcaccctagaatcca 97  Q
    |||||| ||||||||||||| |||||| |||||| |||||| || |||| |||||||||| |||||| | |||||||| || |||| ||| ||||||    
T  8443 ttgtttccaacaaatatgatgcattga-taaatccaaccgt-atttctttgtggtccaccagtgagggatttaattgagccttcactctaaaatcca 8349  T

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