View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_36 (Length: 333)
Name: NF9778_low_36
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 25965297 - 25965600
Alignment:
| Q |
20 |
gatgtaatgtagttctattaccttgcggcatgtttcttggtgaaactcttctttgtttggtgccttatggaaatacaaataccctccaaaaatctcatca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25965297 |
gatgtaatgtagttctattaccttgcggcatgtttcttggtgaaactcttctttgtttggtgccttatggaaatacaaataccctccaaaaatctcatca |
25965396 |
T |
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| Q |
120 |
gatccttctccagaaatcacccatttgactcctgatgatttgatctttcgagacatcagaaacataggtgttgctgccctaattgtagttacatcatatg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25965397 |
gatccttctccagaaatcacccatttgactcctgatgatttgatctttcgagacatcagaaacataggtgttgctgccctaattgtagttacatcatatg |
25965496 |
T |
|
| Q |
220 |
tttctgtatgatagatgacatcctcgatcgcatctatgccatcctgcatagaccacaaaaaataataattaaataatgaatcataattttgtttgccccc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25965497 |
tttctgtatgatagatgacatcctcgatcgcatctatgccatcctgcatagaacacaaaaaataataattaaataatgaatcataattttgtttgcccca |
25965596 |
T |
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| Q |
320 |
tatg |
323 |
Q |
| |
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|||| |
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| T |
25965597 |
tatg |
25965600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 39545271 - 39545171
Alignment:
| Q |
33 |
tctattaccttgcggcatgtttcttggtgaaactcttctttgtttggtgccttatggaaatacaaataccctccaaaaatctcatcagatccttctccag |
132 |
Q |
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|||||||| || |||||||||||||| |||| |||||| ||||| || |||||||||||||||| || |||||||| || ||||| || |||||||||| |
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| T |
39545271 |
tctattacttttcggcatgtttcttgatgaagctcttccttgttaggcgccttatggaaatacaggtaacctccaaatatttcatctgaaccttctccag |
39545172 |
T |
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| Q |
133 |
a |
133 |
Q |
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| T |
39545171 |
a |
39545171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 39 - 264
Target Start/End: Original strand, 30272706 - 30272931
Alignment:
| Q |
39 |
accttgcggcatgtttcttggtgaaactcttctttgtttggtgccttatggaaatacaaataccctccaaaaatctcatcagatccttctccagaaatca |
138 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||| || || |||| ||| || ||||| ||||||||||||||||| ||||| |||| |
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| T |
30272706 |
accttgcggcatgtttcttggtggaactcttccttgtttggtgccttgtgaaagtacagatatccaccaaatatctcatcagatccttcaccagagatca |
30272805 |
T |
|
| Q |
139 |
cccatttgactcctgatgatttgatctttcgagacatcagaaacataggtgttgctgccctaattgtagttacatcatatgtttctgtatgatagatgac |
238 |
Q |
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| T |
30272806 |
cccatttgacaccaagtgatttaatcttccttgacataagaaacataggtgtacttgctctaattgtagtcacatcatatgtttcaacatggtatataac |
30272905 |
T |
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| Q |
239 |
atcctcgatcgcatctatgccatcct |
264 |
Q |
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|||||| || |||||||| ||||||| |
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| T |
30272906 |
atcctcaattgcatctataccatcct |
30272931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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