View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_37 (Length: 328)
Name: NF9778_low_37
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_37 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 35647017 - 35646842
Alignment:
| Q |
15 |
tcaacttaatacgtttatatgattctaaatatacatggtagaaaacgaagcttacaaaaattgaaatagatattttgaattggattgaaggaaaatcgat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35647017 |
tcaacttaatacgtttatatgattctaaatatacatggtagaaaacgaagcttacaaaaattgaaatagatattttgaattggattgaaggaaaatcgat |
35646918 |
T |
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| Q |
115 |
ggaggagagaaagagtatcccaaaagcaaatttgttcnnnnnnngtgttttcttttcgtgatattttctattttat |
190 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
35646917 |
ggaggagagaaagagtatcccaaaagcaaatttgttcaaaaaaaatattttcttttcgtgatattttctattttat |
35646842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 35646683 - 35646603
Alignment:
| Q |
237 |
gtggtccagtttgattcagtttatgaatacagttcatttaaccacatttttccacatccatatatagtacaagatgccctt |
317 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||| |||| |
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| T |
35646683 |
gtggtccaatttgattcagtttatgtatacagttcatttaaccacatttttgcacacccatatatagtacaagatgacctt |
35646603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 292
Target Start/End: Complemental strand, 19534404 - 19534304
Alignment:
| Q |
192 |
tttgtggttcagttcataaaccatttaatatggttttgnnnnnnngtggtccagtttgattcagtttatgaatacagttcatttaaccacatttttccac |
291 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||||| ||||| |||| |||||||||||||| ||| |
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| T |
19534404 |
tttgtggttcagttcataaaccatttaatatggttcagtttttttgtggtccagtttggttcagcttatggatacaattcagttaaccacatttttgcac |
19534305 |
T |
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| Q |
292 |
a |
292 |
Q |
| |
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| |
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| T |
19534304 |
a |
19534304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 41070913 - 41070859
Alignment:
| Q |
25 |
acgtttatatgattctaaatatacatggtagaaaacgaagcttacaaaaattgaaa |
80 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41070913 |
acgtttctgtgattctaaatatacatggtagaaaacgaagctta-aaaaattgaaa |
41070859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 292
Target Start/End: Complemental strand, 35704374 - 35704272
Alignment:
| Q |
192 |
tttgtggttcagttcataaaccatttaatatggtt--ttgnnnnnnngtggtccagtttgattcagtttatgaatacagttcatttaaccacatttttcc |
289 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| ||||| |||| |||||||||||||| | |
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| T |
35704374 |
tttgtggttcagttcataaaccatttaatatggttcagtttttttttgtggtccaatttgattcagtttatagatacaattcagttaaccacatttttgc |
35704275 |
T |
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| Q |
290 |
aca |
292 |
Q |
| |
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||| |
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| T |
35704274 |
aca |
35704272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 22024108 - 22024053
Alignment:
| Q |
237 |
gtggtccagtttgattcagtttatgaatacagttcatttaaccacatttttccaca |
292 |
Q |
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||||| ||||||| ||||||||||||||||| || | |||||||||||||| |||| |
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| T |
22024108 |
gtggttcagtttggttcagtttatgaatacaattgagttaaccacatttttgcaca |
22024053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 292
Target Start/End: Complemental strand, 27293610 - 27293510
Alignment:
| Q |
192 |
tttgtggttcagttcataaaccatttaatatggttttgnnnnnnngtggtccagtttgattcagtttatgaatacagttcatttaaccacatttttccac |
291 |
Q |
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|||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| |||| || || |||| ||||||| |||||| ||| |
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| T |
27293610 |
tttgtggttcagttcataaatcatttaatatggttcaatttttttgtggcccagtttgattcagtgtatggatgcaattcagttaaccatatttttacac |
27293511 |
T |
|
| Q |
292 |
a |
292 |
Q |
| |
|
| |
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| T |
27293510 |
a |
27293510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 35151 - 35200
Alignment:
| Q |
243 |
cagtttgattcagtttatgaatacagttcatttaaccacatttttccaca |
292 |
Q |
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||||||| ||||||||||| ||||| |||| |||||||||||||| |||| |
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| T |
35151 |
cagtttggttcagtttatggatacaattcagttaaccacatttttgcaca |
35200 |
T |
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