View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_39 (Length: 322)
Name: NF9778_low_39
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 70 - 313
Target Start/End: Original strand, 39823800 - 39824058
Alignment:
| Q |
70 |
actgaattgaactagttatgaaatgtgatctgccaatctagtgttcccaaagatggaatttataggagttggaattggag---------------agtga |
154 |
Q |
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| T |
39823800 |
actgaattgaactagttatgaaatgtgatctgccaaactagtgttcccaaagatggaatttataggagttggaattggaggtatgtatggtagatagtga |
39823899 |
T |
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| Q |
155 |
tcagtatgtggaacaagcagtcacgttaattaatgttgttatggtttgtggttttgctttacaaccatgcataggtgtttatttaattaattgaacaaaa |
254 |
Q |
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| T |
39823900 |
tcagtatgtggaacaagcagtcacgttaattaatgttgttatggtttgtggttttgctttacaaccatgcataggtgtttatttaattaattgaacaaaa |
39823999 |
T |
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| Q |
255 |
aatagaatgtcctgttgtcatagtgccatgtattatggaaattaaaatttggtctgtgc |
313 |
Q |
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| T |
39824000 |
aatagaatgtcctgttgtcatagtgccatgtattatggaaattaaaatttggtctgtgc |
39824058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 313
Target Start/End: Original strand, 39834245 - 39834378
Alignment:
| Q |
184 |
ttaatgttgttatggtttgtggttttgctttacaaccatgcata----ggtgtttatttaattaattgaacaaa-----aaatagaatgtcctgttgtca |
274 |
Q |
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| T |
39834245 |
ttaatgttgatatggtttgtggttttgctttacaaccatgcatgcattggtgtttatttaattaattgagcaaaaaaataaatataatgtcttgttgcca |
39834344 |
T |
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| Q |
275 |
tagtgccatgtattatggaaattaaaatttggtctgtgc |
313 |
Q |
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| T |
39834345 |
ta-----atatattatggaaattaaaatttggtttgtgc |
39834378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 39834140 - 39834186
Alignment:
| Q |
102 |
ccaatctagtgttcccaaagatggaatttataggagttggaattgga |
148 |
Q |
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| T |
39834140 |
ccaaactagtgttcccaaagatggaatttataggagttgggattgga |
39834186 |
T |
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