View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_40 (Length: 315)
Name: NF9778_low_40
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 24379700 - 24379408
Alignment:
| Q |
19 |
agtaggcacattgtggcgtgttcaatgtccttgtgagtgcttcatagttcttaaacattgaatagagagtataagttggaagaatatactaacaattttt |
118 |
Q |
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| T |
24379700 |
agtaggcacattgtggcgtgttcaatgtccttgtcagtgcttcatagttcttaaacattgaatagagagtataagttggaagaatatactaacaattttt |
24379601 |
T |
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| Q |
119 |
ctcttcggtttactcctcttggagtttttacctgtttccttgacatcactcctctcatcttctgaaataatcaaacacacgaatgttagaaaggaaaaat |
218 |
Q |
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| T |
24379600 |
ctcttcggtttactcctcttggagtttttacctgtttccttgacatcactcctctcatcttctgaaataatcaaacacacgaatgttagaaaggaaaaat |
24379501 |
T |
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| Q |
219 |
tcaaccaattgcgaatgaagcaaagactctcaccaatagtcaaaacgcgagataaagagcttgaatactctagtgcaacttcctttgcttctc |
311 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24379500 |
tcaactaattgcgaatgaagcaaagactctcaccaatagtcaaaacgcgagataaagagcttgaatactctagtgcaacttcctttgcttctc |
24379408 |
T |
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