View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9778_low_41 (Length: 306)
Name: NF9778_low_41
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_41 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 7461223 - 7461498
Alignment:
| Q |
20 |
ccagaaatgtttcctttcccacttttccttttccagttcctataaaaatgtcaaaaattggactcttagtttcactaatgatgattcttaaataagtaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7461223 |
ccagaaatgtttcctttcccacttttccttttccagttcctataaaaatgtcaaaaattggactcttagtttcactaatgatgattcttaaataagtaac |
7461322 |
T |
|
| Q |
120 |
accttaaaaggaaaatatataatttcaatattttagtggttatagtaagggattatttatgacaaaacaaaagggaaaataaagtaaatcttaatgaact |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7461323 |
accttaaaaggaaaatatataatttcaatattttagtggttatagtaagggattatttatgacaaaacaaaagggaaaataaggtaaatcttaatgaact |
7461422 |
T |
|
| Q |
220 |
gagaggtcagaaactcctctaaattatataagataaaatttgcagtagataaaacagtgagtataattcatttctt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7461423 |
gagaggtcagaaactcctctaaattatataagataaaatttgcagtagataaaacagtgagtataattcatttctt |
7461498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 6354213 - 6354248
Alignment:
| Q |
20 |
ccagaaatgtttcctttcccacttttccttttccag |
55 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
6354213 |
ccagaaatgtttcctttcccacttttccttttccag |
6354248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 6425763 - 6425813
Alignment:
| Q |
25 |
aatgtttcctttcccacttttccttttccagttcctataaaaatgtcaaaa |
75 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| |||||| |||||| |
|
|
| T |
6425763 |
aatgtttgctttcccacttttccttttccacttcctacaaaaatttcaaaa |
6425813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 6392700 - 6392779
Alignment:
| Q |
28 |
gtttcctttcccacttttccttttccagttccta---taaaaatgtcaaaaattggactcttagtttcactaatgatgat |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||| ||| | ||| |||||||| ||||||||| |
|
|
| T |
6392700 |
gtttcctttcccacttttccttttccagtagctatgttaaaaatgtcaaatattagtttctcagtttcacaaatgatgat |
6392779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 6411840 - 6411919
Alignment:
| Q |
28 |
gtttcctttcccacttttccttttccagttccta---taaaaatgtcaaaaattggactcttagtttcactaatgatgat |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||| ||| | ||| |||||||| ||||||||| |
|
|
| T |
6411840 |
gtttcctttcccacttttccttttccagtagctatgttaaaaatgtcaaatattagtttctcagtttcacaaatgatgat |
6411919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 6354489 - 6354521
Alignment:
| Q |
183 |
aaaacaaaagggaaaataaagtaaatcttaatg |
215 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
6354489 |
aaaacaaaagggaaaataaggtaaatcttaatg |
6354521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University