View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_42 (Length: 303)
Name: NF9778_low_42
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 70 - 287
Target Start/End: Complemental strand, 24284998 - 24284780
Alignment:
| Q |
70 |
tgtaagaagaaggcgcgaaaagccctatacccaaaaattcatcccccgccaaatccattacaccatttcacaaaaccctcactttctttca-atctacaa |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24284998 |
tgtaagaagaaggcgcgaaaagccctatacccaaaaattcatcccccgccaaatgcattacaccatttcacaaaaccctcactttctttcccatctacaa |
24284899 |
T |
|
| Q |
169 |
caaaacgattcatcaaaattcacatcgattcgtcaaaatttcgcgttttgcatataaggaaaatcattcaactcatgggttccgcttctcttctcaattc |
268 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24284898 |
cataacgattcatcaaaattcacatcgattcgtcaaaatttcgcgttttgcatataaggaaaatcattcaactaatgggttccgcttctcttctcaattc |
24284799 |
T |
|
| Q |
269 |
ttcagatcctggtaatata |
287 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
24284798 |
ttcagatcctggtaatata |
24284780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 113 - 287
Target Start/End: Original strand, 12034825 - 12034999
Alignment:
| Q |
113 |
ccccgccaaatccattacaccatttcacaaaaccctcactttctttcaatctacaacaaaacgattcatcaaaattcacatcgattcgtcaaaatttcgc |
212 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| ||| |
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| T |
12034825 |
ccccgccaaatccatcacaccattttacaaaaccctcactttctttccatctacaacaaaaccattcatcaaaattcacatcgattcttcaaaattccgc |
12034924 |
T |
|
| Q |
213 |
gttttgcatataaggaaaatcattcaactcatgggttccgcttctcttctcaattcttcagatcctggtaatata |
287 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
12034925 |
gtttttcatataaggaaaatcattcaactcatgggttccgcttctcttctcaattcttcagatcctggtactata |
12034999 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 174 - 288
Target Start/End: Complemental strand, 20167222 - 20167108
Alignment:
| Q |
174 |
cgattcatcaaaattcacatcgattcgtcaaaatttcgcgttttgcatataaggaaaatcattcaactcatgggttccgcttctcttctcaattcttcag |
273 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20167222 |
cgattcatcaaaattcaattcgattcatcaaaattccgcgttttgcatattaggaaaatcattcaagtcatgggttccgcttctcttctcaattcttcag |
20167123 |
T |
|
| Q |
274 |
atcctggtaatatat |
288 |
Q |
| |
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||||||||||||||| |
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| T |
20167122 |
atcctggtaatatat |
20167108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 191
Target Start/End: Complemental strand, 20167339 - 20167225
Alignment:
| Q |
81 |
ggcgcgaaaagccctatacc--caaaaattcatcccccgccaaatccattacac--catttcacaaaaccctcactttctttcaatctacaacaaaacga |
176 |
Q |
| |
|
|||||||||| || |||||| ||||| | ||| |||| |||||||||| |||| | |||||||||| |||||||||||||| |||| ||||||||||| |
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|
| T |
20167339 |
ggcgcgaaaatccttataccatcaaaactgcattcccctccaaatccatcacacaccctttcacaaaatcctcactttctttccatctgcaacaaaacga |
20167240 |
T |
|
| Q |
177 |
ttcatcaaaattcac |
191 |
Q |
| |
|
||||||||||||||| |
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|
| T |
20167239 |
ttcatcaaaattcac |
20167225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 123 - 287
Target Start/End: Complemental strand, 8065916 - 8065763
Alignment:
| Q |
123 |
tccattacaccatttcacaaaaccctcactttctttcaatctacaacaaaa--cgattcatcaaaattcacatcgattcgtcaaaatttcgcgttttgca |
220 |
Q |
| |
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||||| |||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| ||||| | |
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| T |
8065916 |
tccatcacacaatttcacaaaaccctcactttctttccatctacaacaaaaaacgattcatcaaaattcacctcgattcaacaaaactc----------- |
8065828 |
T |
|
| Q |
221 |
tataaggaaaatcattcaactcatgggttccgcttctcttctcaattcttcagatcctggtaatata |
287 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8065827 |
--taaggaaaatcattcaactcatgggttccgcttctcttctcaattcttcagatcctggtaatata |
8065763 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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