View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_43 (Length: 302)
Name: NF9778_low_43
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 36031696 - 36031420
Alignment:
| Q |
16 |
gttcttagtcgcggaattggtctggaaggtctttctagtgttttggctggtctctggggtactggaactggatctaccactttaactgaaaatgttcata |
115 |
Q |
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| T |
36031696 |
gttcttagtcgcggaattggtctggaaggtctttctagtgttttggctggtctctggggtactggaactggatctaccactttaactgaaaatgttcata |
36031597 |
T |
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| Q |
116 |
caattgctgtgactaaaatgggaagccgcagagcagttcaattgggtgcatgtattctgatagtgttatctctcgtgggtaagtatctattatcctgttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36031596 |
caattgctgtgactaaaatgggaagccgcagagcagttcaattgggtgcatgtattctgatagtgttatctctcgtgggtaagtatctattatcctgttg |
36031497 |
T |
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| Q |
216 |
tacttgcatttacctttgacagtccatcttgtgatgaataaccgttgaacagaattagtgttcctgaattgcctttg |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36031496 |
tacttgcatttacctttgacagtccatcttgtgatgaataaccgttgaacagaattagtgttcctgaatagcctttg |
36031420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 44567047 - 44567310
Alignment:
| Q |
16 |
gttcttagtcgcggaattggtctggaaggtctttctagtgttttggctggtctctggggtactggaactggatctaccactttaactgaaaatgttcata |
115 |
Q |
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| T |
44567047 |
gttcttagtcgcggtattggtctagaaggtttttctagtttgttggctggtctctggggtactggaatgggatcaacaactctaaccgaaaatgttcaca |
44567146 |
T |
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| Q |
116 |
caattgctgtgactaaaatgggaagccgcagagcagttcaattgggtgcatgtattctgatagtgttatctctcgtgggtaagtatctattatc---ctg |
212 |
Q |
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| T |
44567147 |
caattgctgggacaaaaatgggaagccgcagaccagttcaattgggtgcgtgtcttctcatagtattatctctatttggtaagtatctattatcattctg |
44567246 |
T |
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| Q |
213 |
ttgt---acttgcatttacctttgacagtccatcttgtgatgaataaccgttgaacagaattag |
273 |
Q |
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|||| | |||||| |||||||| | ||||| |||||| ||| | ||||| ||||||||||| |
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| T |
44567247 |
ttgttgcatttgcatctacctttgttactccatattgtgacgaacagccgttcaacagaattag |
44567310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 20124145 - 20124273
Alignment:
| Q |
15 |
agttcttagtcgcggaattggtctggaaggtctttctagtgttttggctggtctctggggtactggaactggatctaccactttaactgaaaatgttcat |
114 |
Q |
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| T |
20124145 |
agttcttagtcgaggaattggtttggaaggtctttgtagtgtcttggctggtctctggggaactggaactggatctacaactttaaccgaaaatgttcat |
20124244 |
T |
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| Q |
115 |
acaattgctgtgactaaaatgggaagccg |
143 |
Q |
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| T |
20124245 |
acaattgccgtgactaaaatgggaagccg |
20124273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 16069576 - 16069377
Alignment:
| Q |
15 |
agttcttagtcgcggaattggtctggaaggtctttctagtgttttggctggtctctggggt------act-ggaactggatctaccactttaactgaaaa |
107 |
Q |
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|||||||||| | |||||||||| ||||||||||||||||| ||||||| ||||| |||| ||| |||||||||||||| | ||||| | || |
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| T |
16069576 |
agttcttagttgtagaattggtctagaaggtctttctagtgtattggctgctctctagggtcttggaacttggaactggatctacaattttaatt---aa |
16069480 |
T |
|
| Q |
108 |
tgttcatacaattgctgtgactaaaatgggaagccgcagagc-agttcaattgggtgcatgtattctgatagtgttatctctcgtgggtaagtatctatt |
206 |
Q |
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|||||||| | ||||| ||||||| | ||||||| || ||| ||||||||| ||||||||| |||||| ||| ||||||||| | | |||||||||||| |
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| T |
16069479 |
tgttcatatacttgctacgactaaattcggaagccacaaagctagttcaattaggtgcatgtcttctgacagtattatctctctttgctaagtatctatt |
16069380 |
T |
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