View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_44 (Length: 292)
Name: NF9778_low_44
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_44 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 23 - 292
Target Start/End: Complemental strand, 37361755 - 37361486
Alignment:
| Q |
23 |
aataaaaaattaaaatagatggttcatgcctccttattatttgagctgtaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcat |
122 |
Q |
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| T |
37361755 |
aataaaaaattaaaatagatggttcatgcctccttattatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcat |
37361656 |
T |
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| Q |
123 |
tgtcgatcttcctcacatcgcctccatacataaggggagactttgccatagcccacaaagtcatctgtgagataataataaattgatcagaatatatcat |
222 |
Q |
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| T |
37361655 |
tgtcgatcttcctcacatcgcctccatacataaggggagactttgccatagcccacaaagtcatctgtgagataataataaattgatcagaatatatcat |
37361556 |
T |
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| Q |
223 |
aatgcatgcaagcacataattgcataaaaatatataagaaagtaactcggttgtactattcatcaatacc |
292 |
Q |
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| T |
37361555 |
aatgcatgcaagcacataattgcataaaaatatataagaaagtaactcagttgtactattcatcaatacc |
37361486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 27 - 292
Target Start/End: Original strand, 37366310 - 37366575
Alignment:
| Q |
27 |
aaaaattaaaatagatggttcatgcctccttattatttgagctgtaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtc |
126 |
Q |
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| T |
37366310 |
aaaaattaaaatagatggttcatgcctccttattatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtc |
37366409 |
T |
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| Q |
127 |
gatcttcctcacatcgcctccatacataaggggagactttgccatagcccacaaagtcatctgtgagataataataaattgatcagaatatatcataatg |
226 |
Q |
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| T |
37366410 |
gatcttcctcacatcgcctccatacataaggggagactttgccatagcccacaaagtcatctgtgagataataataaattgatcagaatatatcataatg |
37366509 |
T |
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| Q |
227 |
catgcaagcacataattgcataaaaatatataagaaagtaactcggttgtactattcatcaatacc |
292 |
Q |
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| T |
37366510 |
catgcaagcacataattgcataaaaatatataagaaagtaactcagttgtactattcatcaatacc |
37366575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 37383915 - 37383766
Alignment:
| Q |
57 |
tattatttgagctgtaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataag |
156 |
Q |
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||||||| |||||| ||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| |
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| T |
37383915 |
tattattggagctgaaatgattaatctctagtagggttggattcgtgataatttcatatgtggccggatcgattctccgcacatcgcctccatacataag |
37383816 |
T |
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| Q |
157 |
gggagactttgccatagcccacaaagtcatctgtgagataataataaatt |
206 |
Q |
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| T |
37383815 |
gggagattttgccaaagcccacagagtcatctgtgatataataatgaatt |
37383766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 47 - 239
Target Start/End: Original strand, 37408685 - 37408878
Alignment:
| Q |
47 |
catgcctccttattatttgagctgtaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctc |
146 |
Q |
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|||||||| ||||||||||| || || ||||||||| | | |||||||||||||||||||| ||||||||| ||||||||||| || |||||||| |
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| T |
37408685 |
catgcctctatattatttgagttgaaaaaattaatctctggcactgtaggattcgtgataatttcgtatgtggcagggtcgatcttccgcatatcgcctc |
37408784 |
T |
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| Q |
147 |
catacataaggggagactttgccatagcccacaaagtcatctgtgagataataataaattga-tcagaatatatcataatgcatgcaagcacat |
239 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||| |||||||| ||| ||| | ||||| | ||||||||||||||||| ||||| |
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| T |
37408785 |
catacataaggggagactttgccaaagcccataaagtcatctatgagataacaatgaatccactcagagtctatcataatgcatgcaatcacat |
37408878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 206
Target Start/End: Complemental strand, 37376563 - 37376404
Alignment:
| Q |
47 |
catgcctccttattatttgagctgtaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctc |
146 |
Q |
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|||||||| ||||||| |||||| ||||||||||||| |||| ||| |||||||| |||||||||||||||||| |||||| ||| ||||||||||| |
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| T |
37376563 |
catgcctctatattattggagctgaaatgattaatctctagtagggtcggattcgtcataatttcatatgtggcaggatcgatcctccgcacatcgcctc |
37376464 |
T |
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| Q |
147 |
catacataaggggagactttgccatagcccacaaagtcatctgtgagataataataaatt |
206 |
Q |
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| T |
37376463 |
catacataagaggagattttgcaaaagcccacagagtcatctgtgatataataatgaatt |
37376404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 59 - 239
Target Start/End: Original strand, 41228611 - 41228792
Alignment:
| Q |
59 |
ttatttgagctgtaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggg |
158 |
Q |
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||||| |||||| ||| |||||| || || | ||||||||| ||||||||||||||||||||| ||||||||||| || || |||||||||||||||| |
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| T |
41228611 |
ttattagagctgaaataattaatttctagcacggtaggatttgtgataatttcatatgtggcagggtcgatcttccgcatgtcacctccatacataaggg |
41228710 |
T |
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| Q |
159 |
gagactttgccatagcccacaaagtcatctgtgagataataataaattga-tcagaatatatcataatgcatgcaagcacat |
239 |
Q |
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| T |
41228711 |
gagactttgccagagcccataaagtcatctatgagataacaatgaattcactcaaaatctatcataatgcatgcaatcacat |
41228792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 39246344 - 39246281
Alignment:
| Q |
128 |
atcttcctcacatcgcctccatacataaggggagactttgccatagcccacaaagtcatctgtg |
191 |
Q |
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| T |
39246344 |
atcttccgtacatcgcccccatacataaggggagactttgccattgcccacagggtcatctgtg |
39246281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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