View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_45 (Length: 279)
Name: NF9778_low_45
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 38468146 - 38467909
Alignment:
| Q |
14 |
cacttttatgggtctatgttggaccaataatatttttacatgtaacaatctaacgcttgcctgattcttagtgtgtgacaagagctctataataccaaat |
113 |
Q |
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| T |
38468146 |
cacttttatgggtctatgttggaccaata---tttttacatgcaacaatctaacgcttgcgtgattcttagtgtgtgacaagagctctataataccaaat |
38468050 |
T |
|
| Q |
114 |
actgttaattagacaattattttgcatgtgcataactctctgcttagctgatgctnnnnnnnttgctttccggtgatttctataaatacaacacatgaat |
213 |
Q |
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| T |
38468049 |
actgttaattaaacaattattttgcatgtgcataactctctgcttagctgatgctaaaaaaattgctttccggtgatttctataaatacaacacatgaat |
38467950 |
T |
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| Q |
214 |
ttagttatccgtatttgttttatattcatcatcctatgcta |
254 |
Q |
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| T |
38467949 |
ttagttatccgtatttgttttatattcatcatcctatgcta |
38467909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 38448415 - 38448365
Alignment:
| Q |
118 |
ttaattagacaattattttgcatgtgcataactctctgcttagctgatgct |
168 |
Q |
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| T |
38448415 |
ttaattagacacttattttggatgtgtataactctctccttagctgatgct |
38448365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 38549856 - 38549906
Alignment:
| Q |
118 |
ttaattagacaattattttgcatgtgcataactctctgcttagctgatgct |
168 |
Q |
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|||||| |||| |||||||| ||||| |||||||||||||||||||||||| |
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| T |
38549856 |
ttaattggacacttattttggatgtgtataactctctgcttagctgatgct |
38549906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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