View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_47 (Length: 274)
Name: NF9778_low_47
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 262
Target Start/End: Complemental strand, 18468087 - 18467832
Alignment:
| Q |
7 |
cttctacgtgcctaatgtatctctccacgtgtagcacatgctgttctggaaaaa-tattgatttttgttgtattttctctgtaagcttgaggaaaagtcc |
105 |
Q |
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| T |
18468087 |
cttctacgtgcctaatgcatctctccacgtgtagcacatgctgttctggaaaaaatattgatttttgttgtattttctcagtaagtttgaggaaaagtcc |
18467988 |
T |
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| Q |
106 |
atttctcaaccatacccctcagctagaaatatgacaataaatacaagagctttcattcaaaaaattgcattcagaacttggtggttcaagaagaaggaaa |
205 |
Q |
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| T |
18467987 |
att-ctcaaccatacaccctagctagaaatatgacaataaatacaagagctttcattcaaaaaattgcattcagaacttggtggttcaagaagaaggaaa |
18467889 |
T |
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| Q |
206 |
gcgctaagagcatcaaaaagagtctatctcctcaacctttgtcctaaaagtatgttt |
262 |
Q |
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| T |
18467888 |
gcgctaagagcataaaaaagagtctatctcctcaacctttgttctaaaagtatgttt |
18467832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 12216038 - 12216102
Alignment:
| Q |
137 |
tgacaataaatacaagagctttcattcaaaaaattgcattcagaacttggtggttcaagaagaag |
201 |
Q |
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| T |
12216038 |
tgactataaatacaagagatttcattcacaaattctcattcagaacttgacggttcaagatgaag |
12216102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 22297093 - 22297173
Alignment:
| Q |
142 |
ataaatacaagagctttcattcaaaaaattgcattcagaacttggtggttcaagaagaaggaaagcgctaagagcatcaaa |
222 |
Q |
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| T |
22297093 |
ataaatacaagagctttcattcacaatttctcatttagagcttggtggttcaagaggacggcaatcgttaggagcatcaaa |
22297173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 14140953 - 14141012
Alignment:
| Q |
188 |
ggttcaagaagaaggaaagcgctaagagcatcaaaaagagtctatctcctcaacctttgt |
247 |
Q |
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| T |
14140953 |
ggttcaagaggaaggcaagcgctaggagcatcaagaagattctctctcctcaacctttgt |
14141012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 24321969 - 24322040
Alignment:
| Q |
131 |
gaaatatgacaataaatacaagagctttcattcaaaaaattgcattcagaacttggtggttcaagaagaagg |
202 |
Q |
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| T |
24321969 |
gaaatatgtctataattacaagagctctcattcacaaatattcattcagaacttggcggttcaagaagaagg |
24322040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 4451167 - 4451082
Alignment:
| Q |
137 |
tgacaataaatacaagagctttcattcaaaaaattgcattcagaacttggtggttcaagaagaaggaaagcgctaagagcatcaaa |
222 |
Q |
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| T |
4451167 |
tgactataaatacaagagttctcattcaaaaatatccacttagaacttggtggttcaagaggaaggcaagtgttaggagcatcaaa |
4451082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 25425842 - 25425780
Alignment:
| Q |
159 |
cattcaaaaaattgcattcagaacttggtggttcaagaagaaggaaagcgctaagagcatcaa |
221 |
Q |
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| T |
25425842 |
cattcacaaattttcattcagaacttggcggttcaagaggaaggcaagcgctaggagcgtcaa |
25425780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 15183326 - 15183391
Alignment:
| Q |
178 |
agaacttggtggttcaagaagaaggaaagcgctaagagcatcaaaaagagtctatctcctcaacct |
243 |
Q |
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| T |
15183326 |
agaacttggcggttcaagaggaatgcaaatgctaagagcatcaagatgagtctctctcctcaacct |
15183391 |
T |
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