View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_49 (Length: 263)
Name: NF9778_low_49
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 57 - 247
Target Start/End: Complemental strand, 21788654 - 21788465
Alignment:
| Q |
57 |
catgcccgtcttttcgctagtaatctataacaaatatacactttttatgcctataacaaactttgagatattccatcaaaaaacaaattttgnnnnnnnn |
156 |
Q |
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| T |
21788654 |
catgcccgtcttttcgctaataatctataacaaatatacactttttatgcctataacaaactttgagatattccatcaaaaaacaaattttgaaaaaaaa |
21788555 |
T |
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| Q |
157 |
nnntgtggaggaggaaaatattaagagctataaataaaaaagcattaaagaaacgcaccactcaaaattaggtcaaatccgtagttcttct |
247 |
Q |
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| T |
21788554 |
aa-tgtggaggaggaaaatattaagagctataaataaaaaagcattaaagaaacgcaccactcaaaattaggtcaaatccgtagttcttct |
21788465 |
T |
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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 21793220 - 21793143
Alignment:
| Q |
167 |
gaggaaaatattaagagctataaataaaaaagcattaaagaaacgcaccactc-aaaattaggtcaaatccgtagttcttct |
247 |
Q |
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||||||||||| |||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21793220 |
gaggaaaatatcaagagctataca----aaagcattaaagaaacgcaccactcaaaaattaggtcaaatccgtagttcttct |
21793143 |
T |
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