View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_5 (Length: 552)
Name: NF9778_low_5
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 538
Target Start/End: Complemental strand, 5331766 - 5331248
Alignment:
| Q |
18 |
gaatcttacaagactattcattcagcgtgagagtttcgtgacttacttttggtaaatctccaatccgaatggcatcacgagggcaattgtgtggactgta |
117 |
Q |
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| T |
5331766 |
gaatcttacaagactattcatttagcgtgagagtttcgtgacttacttttggtaaatctccaatccgaatggcatcacgagggcaattgtgtggactgta |
5331667 |
T |
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| Q |
118 |
gctgtagtttggtggccctgagaaagggttacaaattttcacgagtccaattaattcttcattttcttcacctattcctagcagctgatacatgagtgat |
217 |
Q |
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| T |
5331666 |
gctgtagtttggtggccctgagaaagggttacaaattttcacgagtccaattaattcttcattttcttcacctattcctagcagctgatacatgagtgat |
5331567 |
T |
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| Q |
218 |
acgtcagaattcaactgagacacaaacaaaccattatatcagaaactatcaaacaattgtatgcatttccttttgaataggtgaatgacnnnnnnnnnnn |
317 |
Q |
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| T |
5331566 |
acgtcagaattcaactgagacacaaacaaaccattatatcagaaactatcaaacaattgtatgcatttccttttgaataggtgaatgac--aaaaaaaaa |
5331469 |
T |
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| Q |
318 |
ttgtacctcaacaatgaaagtgtggattgtgctgccaatttgagctatcaattttccagagaatgagtcattaatgcatggtaacatcgaacccaaacta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5331468 |
ttgtacctcaacaatgaaagtgtggattgtgctgccaatttgagctatcaattttccagagaatgagtcattaatgcatggtaacatcgaacccaaacta |
5331369 |
T |
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| Q |
418 |
ctgttctgtgggttgttctcaaagtcctcaaatgcagagcatgcatcatttgcaaaactgcattcacaatgaaaagagagtttgatcactacaatctcag |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5331368 |
ctgttctgtgggttgttctcaaagtcctcaaatgcagagcatgcatcatttgcaaaactgcattcacaatgaaaagagagtttgattactacaatctcag |
5331269 |
T |
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| Q |
518 |
ttacgaatactctcttcggtc |
538 |
Q |
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| T |
5331268 |
ttacgaatactctcttcggtc |
5331248 |
T |
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