View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_51 (Length: 262)
Name: NF9778_low_51
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 35 - 248
Target Start/End: Complemental strand, 38213405 - 38213192
Alignment:
| Q |
35 |
gttaggaggagatttttaaagnnnnnnnncctgtaagttctcgccagtttcttcaatacagcaaatgtgagttcctttaattatgctttgattcttaaat |
134 |
Q |
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| T |
38213405 |
gttaggaggagattttgaaagaaaaaaaacctgtaagttctcgccagtttcttcaatccagcaaatgtgagttcctttaattatgctttgattcttaaat |
38213306 |
T |
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| Q |
135 |
aagagtaagaatttggtatgaatcttgaatgaattggtaattatagttaagatgtagtgtggttgctataaatttgttttgggacttttagtaacataaa |
234 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
38213305 |
aagagtaagaatttggtatgaatcttgaaggaattggtaattatagttaagatgtagtgtggttgatataaatttattttgggacttttagtaacataaa |
38213206 |
T |
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| Q |
235 |
caaggtgttgtttt |
248 |
Q |
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|||||||||||||| |
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| T |
38213205 |
caaggtgttgtttt |
38213192 |
T |
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