View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9778_low_53 (Length: 261)

Name: NF9778_low_53
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9778_low_53
NF9778_low_53
[»] chr4 (9 HSPs)
chr4 (19-252)||(26121130-26121358)
chr4 (23-252)||(26128561-26128781)
chr4 (19-141)||(26111709-26111831)
chr4 (23-134)||(26085379-26085490)
chr4 (23-141)||(26056135-26056253)
chr4 (23-141)||(26067797-26067915)
chr4 (19-208)||(26038150-26038352)
chr4 (44-85)||(26056612-26056653)
chr4 (19-71)||(26065545-26065597)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 26121358 - 26121130
Alignment:
Q  19 ttattggatgcatcttacttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggacccaagactca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26121358 ttattggatgcatcttacttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggacccaagactca 26121259  T
Q  119 ggtttcattttcatcaaagattatatctttcatttttaaagtttgggtcttctcttaaattttaaggtcatgcatgatttatgttgactcgaaatttaat 218  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||     |    
T  26121258 ggtttcattttcatcaaagattatatctttcattttttaaatttgggtcttctcttaaattttaaggtcttgcatgatttatgttgactcgaaa-----t 26121164  T
Q  219 ttatatcttttgactttactgtttttgttctgtg 252  Q
    ||||||||||||||||||||||||||||| ||||    
T  26121163 ttatatcttttgactttactgtttttgttttgtg 26121130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 252
Target Start/End: Complemental strand, 26128781 - 26128561
Alignment:
Q  23 tggatgcatcttacttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggacccaagactcaggtt 122  Q
    |||||||||| || |||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||    
T  26128781 tggatgcatcatagttttcttttttcctaatgacttctttgcttctcaatccattacctcaattcgtctcttcccttttgctggacccaagacccaggtt 26128682  T
Q  123 tcattttcatcaaagatta--tatctttcatttttaaagtttgggtcttctcttaaattttaaggtcatgcatgatttatgttgactcgaaatttaattt 220  Q
    || ||||||||||||||||  |||||||| | ||     |||   || | | ||||||||||||||| |||||||||| ||||||||| |     |||||    
T  26128681 tctttttcatcaaagattatttatctttcgtgtt-----tttctttcat-ttttaaattttaaggtcttgcatgatttttgttgactcca-----aattt 26128593  T
Q  221 atatcttttgactttactgtttttgttctgtg 252  Q
    ||||||||||||||||||||||||||| ||||    
T  26128592 atatcttttgactttactgtttttgttttgtg 26128561  T

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Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 26111831 - 26111709
Alignment:
Q  19 ttattggatgcatcttacttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggacccaagactca 118  Q
    |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||| ||    
T  26111831 ttattggatgcatcatagttttcttttttcctaatgacttctttgtttctcaatctattacctcaattcgtcacctacctgttgctgtacccaagaccca 26111732  T
Q  119 ggtttcattttcatcaaagatta 141  Q
    |||||||||||||||||||||||    
T  26111731 ggtttcattttcatcaaagatta 26111709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 26085490 - 26085379
Alignment:
Q  23 tggatgcatcttacttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggacccaagactcaggtt 122  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||| ||||||    
T  26085490 tggatgcatcatagttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtcacctacctgttgctgtacccaagacccaggtt 26085391  T
Q  123 tcattttcatca 134  Q
    ||||||||||||    
T  26085390 tcattttcatca 26085379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 26056253 - 26056135
Alignment:
Q  23 tggatgcatcttacttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggacccaagactcaggtt 122  Q
    |||||||||| || |||||| ||||||||| ||||||||||||||||| ||||||||||||| ||||| ||| ||| |||||| ||||||||| ||||||    
T  26056253 tggatgcatcatagttttcttttttcctaaagacttctttgtttctcagtctattacctcaaatcgtcacctacctgttgctgtacccaagacccaggtt 26056154  T
Q  123 tcattttcatcaaagatta 141  Q
    |||||||||||||||||||    
T  26056153 tcattttcatcaaagatta 26056135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 26067915 - 26067797
Alignment:
Q  23 tggatgcatcttacttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggacccaagactcaggtt 122  Q
    |||||||||| || |||||| ||||||||| ||||||||||||||||| ||||||||||||| ||||| ||| ||| |||||| ||||||||| ||||||    
T  26067915 tggatgcatcatagttttcttttttcctaaagacttctttgtttctcagtctattacctcaaatcgtcacctacctgttgctgtacccaagacccaggtt 26067816  T
Q  123 tcattttcatcaaagatta 141  Q
    |||||||||||||||||||    
T  26067815 tcattttcatcaaagatta 26067797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 26038352 - 26038150
Alignment:
Q  19 ttattggatgcatcttacttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggacccaagactca 118  Q
    |||||||||||||||||  ||||| ||||||||||| |||||||||||||||||||||||| |||| ||||| | || || ||| |||| |||| || ||    
T  26038352 ttattggatgcatcttagctttcttttttcctaatggcttctttgtttctcaatctattacatcaaatcgtcgcatcgctgttgttggatccaaaaccca 26038253  T
Q  119 ggtttcattttcatcaaagattata-------------tctttcatttttaaagtttgggtcttctcttaaattttaaggtcatgcatgatttatgttga 205  Q
    ||||| |||||||||||||||| ||             |||||||||||| || |||||||||| |||| ||||||||| || ||||||||||  |||||    
T  26038252 ggttttattttcatcaaagattgtagcttttgtgtttttctttcatttttgaattttgggtcttgtcttgaattttaagctcttgcatgattttcgttga 26038153  T
Q  206 ctc 208  Q
    |||    
T  26038152 ctc 26038150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 26056612 - 26056653
Alignment:
Q  44 ttttcctaatgacttctttgtttctcaatctattacctcaat 85  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  26056612 ttttcctaatgacatctttgtttctcaatctattacctcaat 26056653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 26065597 - 26065545
Alignment:
Q  19 ttattggatgcatcttacttttctattttcctaatgacttctttgtttctcaa 71  Q
    |||| ||||||||||||  ||||| |||||| |||||||||||||||||||||    
T  26065597 ttataggatgcatcttagctttcttttttcccaatgacttctttgtttctcaa 26065545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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