View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_54 (Length: 259)
Name: NF9778_low_54
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 22 - 246
Target Start/End: Original strand, 15764489 - 15764713
Alignment:
| Q |
22 |
cattgcccattgaattgataattgttttggttgaataaattcatgacatgtctcatgcagtgtatggcatatttgaaagaatggcttactatggaatatc |
121 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15764489 |
catttcccattgaattgataattgttttggttgaataaattcatgacatgtctcatgcagtgtatggcatatttgaaagaatggcttactatggaatatc |
15764588 |
T |
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| Q |
122 |
atcaaatttgtttgtgtatttgacaaagaagcttcaccaaggcactgtcacctcttctaacaatgtcaccaattggattggcaccatttttatgactcca |
221 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15764589 |
atcaaatttgtttgtctatttgacaaagaagcttcaccaaggcactgtcacctcttctaacaatgtcaccaattggattggcaccatttttatgactcca |
15764688 |
T |
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| Q |
222 |
atattaggtgcttacattgctgatg |
246 |
Q |
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||||||||||||||||||||||||| |
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| T |
15764689 |
atattaggtgcttacattgctgatg |
15764713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 68 - 246
Target Start/End: Original strand, 15753401 - 15753579
Alignment:
| Q |
68 |
catgtctcatgcagtgtatggcatatttgaaagaatggcttactatggaatatcatcaaatttgtttgtgtatttgacaaagaagcttcaccaaggcact |
167 |
Q |
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||||||| |||||||||||| |||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15753401 |
catgtctactgcagtgtatgggatatttgaaagaattgcttattttggaatatcatcaaatttgtttgtgtatttgacaaagaagcttcaccaaggcact |
15753500 |
T |
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| Q |
168 |
gtcacctcttctaacaatgtcaccaattggattggcaccatttttatgactccaatattaggtgcttacattgctgatg |
246 |
Q |
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| T |
15753501 |
gtcatctcttcaaacaatgtcaacaattgggttggcactgtttttatgactccaatattaggtgcttacattgctgatg |
15753579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 245
Target Start/End: Original strand, 15778244 - 15778458
Alignment:
| Q |
29 |
cattgaattgataattgttttggttgaataaattcatgacatgtctcatgcagtgtatggcatatttgaaagaatggcttactatggaatatcatcaaat |
128 |
Q |
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||||||||||| ||||||||| | ||| | |||||||||||| ||||||||||||||| | |||||||||||||||||||||||| |||||||||||| |
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| T |
15778244 |
cattgaattga--attgttttgatctaatgagttcatgacatgtgtcatgcagtgtatgggacatttgaaagaatggcttactatggtatatcatcaaat |
15778341 |
T |
|
| Q |
129 |
ttgtttgtgtatttgacaaagaagcttcaccaaggcactgtcacctcttctaacaatgtcaccaattggattggcaccatttttatgactccaatattag |
228 |
Q |
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||| | | ||| |||||||||| |||||||| ||||||||||||||||| |||||||||| ||||||| |||| || ||||||| ||||| ||| ||| |
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| T |
15778342 |
ttgatcctatatctgacaaagaaacttcaccagggcactgtcacctcttccaacaatgtcaacaattgggttggaactgtttttattactcccataatag |
15778441 |
T |
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| Q |
229 |
gtgcttacattgctgat |
245 |
Q |
| |
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||||||| |||||||| |
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| T |
15778442 |
gtgcttatgttgctgat |
15778458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 91 - 245
Target Start/End: Original strand, 15735392 - 15735546
Alignment:
| Q |
91 |
tatttgaaagaatggcttactatggaatatcatcaaatttgtttgtgtatttgacaaagaagcttcaccaaggcactgtcacctcttctaacaatgtcac |
190 |
Q |
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||||||| ||||||||||| ||||| ||||||||||||||| | | ||||| ||||| |||||||| ||||| ||||| |||||||||| ||||||||| |
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| T |
15735392 |
tatttgagagaatggcttattatgggatatcatcaaatttgatcttatatttaacaaataagcttcatcaaggtactgtgacctcttctaccaatgtcac |
15735491 |
T |
|
| Q |
191 |
caattggattggcaccatttttatgactccaatattaggtgcttacattgctgat |
245 |
Q |
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||||||| ||||||||| | || |||||||||||||||||||| |||||||| |
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| T |
15735492 |
caattgggctggcaccatgtggatcactccaatattaggtgcttatgttgctgat |
15735546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 76 - 244
Target Start/End: Original strand, 15727801 - 15727969
Alignment:
| Q |
76 |
atgcagtgtatggcatatttgaaagaatggcttactatggaatatcatcaaatttgtttgtgtatttgacaaagaagcttcaccaaggcactgtcacctc |
175 |
Q |
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|||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| | | ||||| | |||||||||||| ||||| ||||| || || |
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| T |
15727801 |
atgcagtgtatgaggtatttgagagaatggcttattatggaatatcatcaaatttgatcttatatttaataaagaagcttcatcaaggtactgtgacttc |
15727900 |
T |
|
| Q |
176 |
ttctaacaatgtcaccaattggattggcaccatttttatgactccaatattaggtgcttacattgctga |
244 |
Q |
| |
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||||| |||||| ||||||||| |||| ||||||| || ||||||||||| |||||||| ||||||| |
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| T |
15727901 |
ttctaccaatgttaccaattgggttggtaccatttggatcactccaatattgggtgcttatgttgctga |
15727969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 246
Target Start/End: Complemental strand, 33416148 - 33415978
Alignment:
| Q |
76 |
atgcagtgtatggcatatttgaaagaatggcttactatggaatatcatcaaatttgtttgtgtatttgacaaagaagcttcaccaaggcactgtcacctc |
175 |
Q |
| |
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|||||||||||| |||||||||||||||| || ||||||||||||||||||||| | | | || |||||||| ||||||||||| || || || | |
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| T |
33416148 |
atgcagtgtatgaagtatttgaaagaatggcatattatggaatatcatcaaatttgatcctcttattcacaaagaaacttcaccaaggaacagtgactgc |
33416049 |
T |
|
| Q |
176 |
ttctaacaatgtcaccaattggattggcaccatttttatgactccaatattaggtgcttacattgctgatg |
246 |
Q |
| |
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| ||||||||| ||||||||| |||| ||||||| ||||| || || ||||||||||| ||||||||| |
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| T |
33416048 |
tagtaacaatgtgaccaattgggttgggaccatttggatgacacctattttaggtgcttatgttgctgatg |
33415978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 155
Target Start/End: Original strand, 11572609 - 11572713
Alignment:
| Q |
48 |
ttggttgaataaattcatgacatgtctcatgcagtgtatggcatatttgaaagaatggcttactatggaatatcatcaaatttgtttgtgtatttgacaa |
147 |
Q |
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|||||||||||||||||||||||||| ||||| |||||| |||||||||||| |||| | |||| |||||||||||||| | | ||| |||||| |
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| T |
11572609 |
ttggttgaataaattcatgacatgtc--atgcaatgtatgcaatatttgaaaga-tggcatgttatgaggtatcatcaaatttgatcatttatctgacaa |
11572705 |
T |
|
| Q |
148 |
agaagctt |
155 |
Q |
| |
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|||||||| |
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|
| T |
11572706 |
agaagctt |
11572713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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