View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_55 (Length: 255)
Name: NF9778_low_55
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 27236953 - 27237132
Alignment:
| Q |
1 |
aaatcagcacacccctatgattcttaccttcgcagatgaactattggtaagcttcccaccagattctgtatgactcctttccatgtatttcatcactaac |
100 |
Q |
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| T |
27236953 |
aaatcagcacacccctatgattcttaccttcgcagatgaactattggtaagcttcccaccagattctgtatgactcctttccttgtatttcatcactaac |
27237052 |
T |
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| Q |
101 |
cttctgttctccttttccagtatgccattttcaacagatagtagtttaccctatacaccaagccaagtcaatcattccat |
180 |
Q |
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| T |
27237053 |
cttctgttctccttttccaatatgccattttcaacagatagtagtttaccctatacaccaagccaagtcagtcattccat |
27237132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 27215350 - 27215534
Alignment:
| Q |
1 |
aaatcagcacacccctatgattcttaccttcgcagatgaactattggtaagcttcccaccagattctgtatgactcctttccatgtatttcatcactaac |
100 |
Q |
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| T |
27215350 |
aaatcagcacacccctatgattcttaccttcgcagatgaactattggtaagctttccaccagattctgtatgactcctttccttgtatttcatcactaac |
27215449 |
T |
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| Q |
101 |
cttctgttctccttttccagtatgccattttcaacagatagtagtttacccta-----tacaccaagccaagtcaatcattccat |
180 |
Q |
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| T |
27215450 |
cttctgttctccttttccaatatgccattttcaacagatagtagtttaccctatggtttacaccaagccaagtcagtcattccat |
27215534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 27201170 - 27201259
Alignment:
| Q |
94 |
cactaaccttctgttctccttttccagtatgccattttcaacagatagtagtttacccta-----tacaccaagccaagtcaatcattccat |
180 |
Q |
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| T |
27201170 |
cactaaccttctgttctccttttccaatatgcca--ttcaacagatagtagtttaccctatggtttacaccaagccaagtcagtcattccat |
27201259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 27201291 - 27201332
Alignment:
| Q |
212 |
taaggtggtcagcaatcctcacttcctcttcatctcagtcga |
253 |
Q |
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| T |
27201291 |
taaggtggtcagcaatcctcacctcctcttcagctctgtcga |
27201332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 27215566 - 27215607
Alignment:
| Q |
212 |
taaggtggtcagcaatcctcacttcctcttcatctcagtcga |
253 |
Q |
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| T |
27215566 |
taaggtggtcagcaatcctcacctcctcttcagctctgtcga |
27215607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 27237164 - 27237205
Alignment:
| Q |
212 |
taaggtggtcagcaatcctcacttcctcttcatctcagtcga |
253 |
Q |
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| T |
27237164 |
taaggtggtcagcaatcctcacctcctcttcagctctgtcga |
27237205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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