View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_57 (Length: 252)
Name: NF9778_low_57
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 6811232 - 6811010
Alignment:
| Q |
20 |
gtcccttgcattgtcattacttaggccagctaggagctatggtgatgaagaactattacaagagaaaacaaaagtcacaaaagataaccatggaactgtt |
119 |
Q |
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| T |
6811232 |
gtcccttgcattgtcattactaaggccagctaggagctatggtgatgaagaactattacaagagaaaacaaaagtcacaaaagataaccatggaactgtt |
6811133 |
T |
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| Q |
120 |
gccaaagtcttcattgtgtgccaacaagacaaagtgttagagcatgattttcagctatcaatgattgaacgaaaccctgctaatgatgtcaaagtgattg |
219 |
Q |
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| T |
6811132 |
gccaaagtcttcattgtgtgccaacaagacaaagtgttagagcatgattttcagctatcaatgattgaacgaaaccctgctaatgatgtcaaagtgattg |
6811033 |
T |
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| Q |
220 |
ttgatgctgaccacatgcctatg |
242 |
Q |
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||||||||||||||||||||||| |
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| T |
6811032 |
ttgatgctgaccacatgcctatg |
6811010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 6800137 - 6799915
Alignment:
| Q |
20 |
gtcccttgcattgtcattacttaggccagctaggagctatggtgatgaagaactattacaagagaaaacaaaagtcacaaaagataaccatggaactgtt |
119 |
Q |
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|||||||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
6800137 |
gtcccttgcaatgtcattaataaggcctgctaggagctatggtgatgaagaactattacaagagaaaacaagagtcacaaaagataactatggaactgtt |
6800038 |
T |
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| Q |
120 |
gccaaagtcttcattgtgtgccaacaagacaaagtgttagagcatgattttcagctatcaatgattgaacgaaaccctgctaatgatgtcaaagtgattg |
219 |
Q |
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| T |
6800037 |
gccaaagtcttcattgtgtgccaacaagacaaagtattagagcatgattttcagctatcaatgattgaacgaaaccctgctaatgatgtcaaagtgattg |
6799938 |
T |
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| Q |
220 |
ttgatgctgaccacatgcctatg |
242 |
Q |
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||||||||||||||||||||||| |
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| T |
6799937 |
ttgatgctgaccacatgcctatg |
6799915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 6822165 - 6821949
Alignment:
| Q |
20 |
gtcccttgcattgtcattacttaggccagctaggagctatggtgatgaagaactattacaagagaaaacaaaagtcacaaaagataaccatggaactgtt |
119 |
Q |
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|||||||||| |||||||| | || || | | | |||| || |||| ||||||||||| ||||||||||| |||||| || | ||| ||||||||||| |
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| T |
6822165 |
gtcccttgcaatgtcattaataagacctgttcgtagctttgctgatcaagaactattaggagagaaaacaagtgtcacacaaaacaactatggaactgtt |
6822066 |
T |
|
| Q |
120 |
gccaaagtcttcattgtgtgccaacaagacaaagtgttagagcatgattttcagctatcaatgattgaacgaaaccctgctaatgatgtcaaagtgattg |
219 |
Q |
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|| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6822065 |
gcaaaagtctacattgtatgccaacaagacaaagtgttagagcatgattttcagctatcaatgattgaacgaaaccctgctaatgatgtcaaagtgattg |
6821966 |
T |
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| Q |
220 |
ttgatgctgaccacatg |
236 |
Q |
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|||||||||| |||||| |
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| T |
6821965 |
ttgatgctgatcacatg |
6821949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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