View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_61 (Length: 250)
Name: NF9778_low_61
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2689257 - 2689035
Alignment:
| Q |
1 |
tcttacaaatcggttttgcaaagataagttagacctaatatataaaatctaagactataaattaaattatttactgtttgtttaaaaaacatctcttgca |
100 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2689257 |
tcttataaatcggttttgtaaagataagttagacctaatatataaactctaagactataaattaaattatttactgtttgtttaaaaaacatctcttgca |
2689158 |
T |
|
| Q |
101 |
ctgaagagtttcaagtatttggtttatcaattagtgcaaagaaattctttgtgatattggttgcagtgattatcttgccaacaatttggttagataattt |
200 |
Q |
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| T |
2689157 |
ccgaagagtttcaagtatttggtttatcaattagtgcaaagaaatcctttgtgatattggttgcattgattatcttgccaacaatttggttggataattt |
2689058 |
T |
|
| Q |
201 |
gagtcttctttcttatgtatctg |
223 |
Q |
| |
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|||||| |||||||||||||||| |
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| T |
2689057 |
gagtctgctttcttatgtatctg |
2689035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 102 - 234
Target Start/End: Complemental strand, 2696963 - 2696831
Alignment:
| Q |
102 |
tgaagagtttcaagtatttggtttatcaattagtgcaaagaaattctttgtgatattggttgcagtgattatcttgccaacaatttggttagataatttg |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2696963 |
tgaagagtttcaagtatttggtttatcaattggtgcaaagaaattctttgtgatattggttgcagtgattatcttgccaacaatttggttggataatttg |
2696864 |
T |
|
| Q |
202 |
agtcttctttcttatgtatctgcaagtggtgtg |
234 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
2696863 |
agtctgctttcttatgtatctgcaagtggtgtg |
2696831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 102 - 234
Target Start/End: Original strand, 2721695 - 2721827
Alignment:
| Q |
102 |
tgaagagtttcaagtatttggtttatcaattagtgcaaagaaattctttgtgatattggttgcagtgattatcttgccaacaatttggttagataatttg |
201 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2721695 |
tgaagagtttcaagtatttggtttatcaattggtgcaaagaaattctttgtgatattggttgcagtgattatcttgccaacaatttggttggataatttg |
2721794 |
T |
|
| Q |
202 |
agtcttctttcttatgtatctgcaagtggtgtg |
234 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
2721795 |
agtctgctttcttatgtatctgcaagtggtgtg |
2721827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 102 - 234
Target Start/End: Original strand, 55778717 - 55778849
Alignment:
| Q |
102 |
tgaagagtttcaagtatttggtttatcaattagtgcaaagaaattctttgtgatattggttgcagtgattatcttgccaacaatttggttagataatttg |
201 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55778717 |
tgaagagtttcaagtatttggattatcaattggtgcaaagaaattctttgtgatattggttgcagtgattatcttgccaacaatttggttagataatttg |
55778816 |
T |
|
| Q |
202 |
agtcttctttcttatgtatctgcaagtggtgtg |
234 |
Q |
| |
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||| ||||||||||||||||||||||||||||| |
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|
| T |
55778817 |
agttttctttcttatgtatctgcaagtggtgtg |
55778849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 102 - 234
Target Start/End: Original strand, 55842897 - 55843029
Alignment:
| Q |
102 |
tgaagagtttcaagtatttggtttatcaattagtgcaaagaaattctttgtgatattggttgcagtgattatcttgccaacaatttggttagataatttg |
201 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55842897 |
tgaagagtttcaagtatttggattatcaattggtgcaaagaaattctttgtgatattggttgcagtgattatcttgccaacaatttggttagataatttg |
55842996 |
T |
|
| Q |
202 |
agtcttctttcttatgtatctgcaagtggtgtg |
234 |
Q |
| |
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||| ||||||||||||||||||||||||||||| |
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|
| T |
55842997 |
agttttctttcttatgtatctgcaagtggtgtg |
55843029 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 102 - 234
Target Start/End: Original strand, 28047158 - 28047290
Alignment:
| Q |
102 |
tgaagagtttcaagtatttggtttatcaattagtgcaaagaaattctttgtgatattggttgcagtgattatcttgccaacaatttggttagataatttg |
201 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28047158 |
tgaagagtttcaagtatttggattatcaattggtgtaaagaaattctttatgatattggttgcagtgattatcttgccaacaatttggttagataatttg |
28047257 |
T |
|
| Q |
202 |
agtcttctttcttatgtatctgcaagtggtgtg |
234 |
Q |
| |
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||||||||||||||||||||| ||||||||||| |
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| T |
28047258 |
agtcttctttcttatgtatctacaagtggtgtg |
28047290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 102 - 234
Target Start/End: Complemental strand, 10838372 - 10838240
Alignment:
| Q |
102 |
tgaagagtttcaagtatttggtttatcaattagtgcaaagaaattctttgtgatattggttgcagtgattatcttgccaacaatttggttagataatttg |
201 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||| |||| |||||||||||||| || | | ||| ||||||||| ||||||||||| ||||| |
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| T |
10838372 |
tgaagagtttcaagtctttggtttatcaattagggcaaagcaattttttgtgatattggtagctcttagtattttgccaacagtttggttagatgatttg |
10838273 |
T |
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| Q |
202 |
agtcttctttcttatgtatctgcaagtggtgtg |
234 |
Q |
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||| | ||||||||||||||||||||||||||| |
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|
| T |
10838272 |
agtttgctttcttatgtatctgcaagtggtgtg |
10838240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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