View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9778_low_66 (Length: 243)

Name: NF9778_low_66
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9778_low_66
NF9778_low_66
[»] chr3 (20 HSPs)
chr3 (1-227)||(51882006-51882236)
chr3 (1-45)||(10102824-10102868)
chr3 (1-45)||(10213747-10213791)
chr3 (1-45)||(11358259-11358303)
chr3 (1-45)||(16792966-16793010)
chr3 (1-45)||(18870717-18870761)
chr3 (1-45)||(20079747-20079791)
chr3 (1-45)||(29631211-29631255)
chr3 (1-45)||(38130951-38130995)
chr3 (1-45)||(48849755-48849799)
chr3 (1-36)||(5428437-5428472)
chr3 (1-39)||(10922306-10922344)
chr3 (1-45)||(3755364-3755408)
chr3 (1-45)||(4601869-4601913)
chr3 (1-45)||(14827550-14827594)
chr3 (1-45)||(25340916-25340960)
chr3 (1-45)||(25441492-25441536)
chr3 (1-45)||(31138442-31138485)
chr3 (1-45)||(34899122-34899166)
chr3 (1-45)||(45431973-45432017)
[»] chr1 (13 HSPs)
chr1 (3-45)||(15854080-15854122)
chr1 (1-42)||(16533028-16533069)
chr1 (1-45)||(5907824-5907868)
chr1 (1-45)||(1794621-1794665)
chr1 (1-45)||(8210377-8210421)
chr1 (1-45)||(8736460-8736504)
chr1 (1-41)||(25532998-25533038)
chr1 (1-37)||(27449445-27449481)
chr1 (1-45)||(32962588-32962632)
chr1 (1-45)||(34521182-34521226)
chr1 (1-45)||(41973280-41973324)
chr1 (1-45)||(45139998-45140042)
chr1 (1-45)||(50638908-50638952)
[»] chr5 (13 HSPs)
chr5 (3-44)||(33412118-33412159)
chr5 (5-45)||(14474863-14474903)
chr5 (1-45)||(22522793-22522837)
chr5 (1-45)||(27219313-27219357)
chr5 (1-45)||(40715941-40715985)
chr5 (2-45)||(37021364-37021407)
chr5 (1-45)||(6489032-6489076)
chr5 (1-45)||(6624801-6624845)
chr5 (1-45)||(15889436-15889480)
chr5 (1-45)||(16701573-16701617)
chr5 (1-45)||(27086103-27086147)
chr5 (1-45)||(40959027-40959071)
chr5 (1-45)||(41630104-41630148)
[»] chr8 (18 HSPs)
chr8 (1-45)||(8881300-8881344)
chr8 (1-44)||(10601788-10601831)
chr8 (1-45)||(12748926-12748970)
chr8 (1-45)||(13286156-13286199)
chr8 (1-45)||(32051524-32051568)
chr8 (3-45)||(6235543-6235585)
chr8 (1-38)||(18533694-18533731)
chr8 (4-45)||(32286356-32286397)
chr8 (1-45)||(444438-444482)
chr8 (1-45)||(15001267-15001311)
chr8 (1-45)||(15020786-15020830)
chr8 (1-45)||(19260571-19260615)
chr8 (1-45)||(23159466-23159510)
chr8 (1-37)||(24696006-24696042)
chr8 (1-45)||(24838162-24838206)
chr8 (1-45)||(27587246-27587290)
chr8 (1-45)||(29716692-29716736)
chr8 (1-45)||(40167347-40167391)
[»] chr4 (19 HSPs)
chr4 (1-45)||(54877591-54877635)
chr4 (1-45)||(16304090-16304134)
chr4 (1-45)||(19588179-19588223)
chr4 (1-41)||(37921771-37921811)
chr4 (1-45)||(49041973-49042017)
chr4 (2-45)||(31692624-31692667)
chr4 (6-45)||(43078698-43078737)
chr4 (1-45)||(3936652-3936696)
chr4 (1-45)||(7230305-7230349)
chr4 (1-45)||(8495012-8495056)
chr4 (5-45)||(11198357-11198397)
chr4 (1-45)||(11949755-11949799)
chr4 (1-45)||(19479469-19479513)
chr4 (1-45)||(21318245-21318289)
chr4 (5-45)||(23809978-23810018)
chr4 (1-45)||(38453290-38453334)
chr4 (1-45)||(50362131-50362175)
chr4 (1-45)||(54857607-54857651)
chr4 (1-45)||(56551584-56551628)
[»] chr2 (25 HSPs)
chr2 (1-45)||(20200730-20200774)
chr2 (1-44)||(18693655-18693698)
chr2 (1-45)||(660814-660858)
chr2 (1-45)||(11931630-11931674)
chr2 (1-45)||(23250312-23250356)
chr2 (1-45)||(29544652-29544696)
chr2 (1-45)||(32204569-32204613)
chr2 (1-45)||(37830738-37830782)
chr2 (1-45)||(44526153-44526197)
chr2 (1-44)||(7262831-7262874)
chr2 (2-45)||(27848184-27848227)
chr2 (1-44)||(42791320-42791363)
chr2 (1-43)||(3903837-3903879)
chr2 (3-45)||(8728846-8728888)
chr2 (3-45)||(10735823-10735865)
chr2 (1-37)||(961128-961164)
chr2 (1-45)||(11175810-11175854)
chr2 (1-37)||(18324894-18324930)
chr2 (1-45)||(24579660-24579704)
chr2 (1-45)||(24592838-24592882)
chr2 (1-45)||(25186234-25186278)
chr2 (1-45)||(25612285-25612329)
chr2 (1-45)||(31815879-31815923)
chr2 (1-45)||(33567686-33567730)
chr2 (1-45)||(41748748-41748792)
[»] chr7 (18 HSPs)
chr7 (1-45)||(3830093-3830137)
chr7 (1-45)||(27462428-27462472)
chr7 (2-45)||(14046603-14046646)
chr7 (2-45)||(14356633-14356676)
chr7 (2-45)||(21322201-21322244)
chr7 (2-45)||(21554926-21554969)
chr7 (1-39)||(22267606-22267644)
chr7 (2-39)||(10242506-10242543)
chr7 (1-42)||(38374186-38374227)
chr7 (1-45)||(10326979-10327022)
chr7 (1-45)||(18023704-18023748)
chr7 (1-45)||(19416539-19416583)
chr7 (1-45)||(19599170-19599214)
chr7 (1-37)||(27772233-27772269)
chr7 (1-45)||(33473513-33473557)
chr7 (1-45)||(37930069-37930113)
chr7 (1-45)||(42829226-42829270)
chr7 (1-45)||(47155096-47155140)
[»] chr6 (10 HSPs)
chr6 (1-45)||(8569734-8569778)
chr6 (1-44)||(2692240-2692283)
chr6 (2-44)||(8393745-8393787)
chr6 (1-38)||(18253338-18253375)
chr6 (1-45)||(3808110-3808154)
chr6 (1-45)||(4855581-4855625)
chr6 (1-45)||(27080690-27080734)
chr6 (1-45)||(29740507-29740551)
chr6 (1-45)||(33824906-33824950)
chr6 (1-45)||(34474252-34474296)
[»] scaffold1619 (1 HSPs)
scaffold1619 (1-38)||(1056-1093)
[»] scaffold0674 (1 HSPs)
scaffold0674 (1-45)||(6739-6783)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-45)||(64243-64287)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-45)||(48672-48716)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-45)||(185288-185332)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 51882236 - 51882006
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccaccnnnnnnnnnn-----gggtccgagagaaaattatgagggacgaaattgaatcttc 95  Q
    ||||||||||||||||||||||||||| |||||||||||||||||               ||||||||||||||||||||||||||| ||||||||||||    
T  51882236 caatgcataatatatgcaagatccagggttcaaaccccggccaccacaaaaaaaaaaaatgggtccgagagaaaattatgagggacggaattgaatcttc 51882137  T
Q  96 tttcaaataagaaagaaatcactaatataaaaagacatacgtaatatattatgatacctacatcgagcaataaggaaaaataaggttggtgtggtggccg 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  51882136 tttcaaataagaaagaaatcactaatataaaaagacatacgtaatataatatgatacctacat-gagcaataaggaaaaataaggttggtgtggtggccg 51882038  T
Q  196 agatgggagagttaaggagttgagtgataaag 227  Q
    ||  ||||||||||||||||||||||||||||    
T  51882037 aggcgggagagttaaggagttgagtgataaag 51882006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10102824 - 10102868
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||| |||||| ||||||| |||||||||||||||||    
T  10102824 caatgcataatacatgcaaaatccagggttcaaaccccggccacc 10102868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10213747 - 10213791
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||| |||||| ||||||| |||||||||||||||||    
T  10213747 caatgcataatacatgcaaaatccagggttcaaaccccggccacc 10213791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11358259 - 11358303
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||| ||||||||||||||||||| || |||||||||||||||||    
T  11358259 caattcataatatatgcaagatccggggttcaaaccccggccacc 11358303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16793010 - 16792966
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||||| |||||||||||| ||||    
T  16793010 caatgcataatatatgcaaggtccagggttcaaaccccggtcacc 16792966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18870761 - 18870717
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||| |||||||||| ||||||||    
T  18870761 caatgcataatatatgcaaggtccatgattcaaacctcggccacc 18870717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 20079747 - 20079791
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||||    
T  20079747 caatgtataatatatgcaagatccaagattcaaacctcggccacc 20079791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29631211 - 29631255
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| | | ||||||||||||||||||||    
T  29631211 caatgcataatatatgcaaggttcgggattcaaaccccggccacc 29631255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38130995 - 38130951
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || |||||||||||||||||    
T  38130995 caatgcataatatatgcaaggtccggggttcaaaccccggccacc 38130951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 48849799 - 48849755
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || |||||||||||||||||    
T  48849799 caatgcataatatatgcaaggtccggggttcaaaccccggccacc 48849755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 5428472 - 5428437
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaacc 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  5428472 caatgcataatatatgcaaggtccaggattcaaacc 5428437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 10922344 - 10922306
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccg 39  Q
    |||||||||||||||||||||||| || |||||||||||    
T  10922344 caatgcataatatatgcaagatccggggttcaaaccccg 10922306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3755364 - 3755408
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||||| || ||||| ||||||||    
T  3755364 caatgcataatatatgcaaggtccagggtttaaacctcggccacc 3755408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4601869 - 4601913
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||| ||||||| ||| || |||||||||||||||||    
T  4601869 caatgcataataaatgcaaggtccggggttcaaaccccggccacc 4601913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14827550 - 14827594
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||| ||||||||||||| || || ||||||||||||||    
T  14827550 caatgcataaaatatgcaagatccggggtttaaaccccggccacc 14827594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25340960 - 25340916
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||| ||||||||| ||| || |||||||||||||||||    
T  25340960 caatgcataaaatatgcaaggtccggggttcaaaccccggccacc 25340916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25441536 - 25441492
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||  || |||||||||||||||||    
T  25441536 caatgcataatatatgcaaggtctggggttcaaaccccggccacc 25441492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31138442 - 31138485
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    ||||||||||||||||||||||| ||| ||||||||||| |||||    
T  31138442 caatgcataatatatgcaagatctagg-ttcaaaccccgaccacc 31138485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34899122 - 34899166
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || ||||||||||| |||||    
T  34899122 caatgcataatatatgcaaggtccggggttcaaaccccgaccacc 34899166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45431973 - 45432017
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || ||||||||| |||||||    
T  45431973 caatgcataatatatgcaaggtccggggttcaaaccctggccacc 45432017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 15854122 - 15854080
Alignment:
Q  3 atgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  15854122 atgcataatatatgcaagatccaggattcaaacctcggccacc 15854080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 16533069 - 16533028
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggcc 42  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  16533069 caatgcataatatatgcaaggtctaggattcaaaccccggcc 16533028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5907824 - 5907868
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||||| |||||||||||| ||||    
T  5907824 caatgcataatatatgcaaggtccagggttcaaaccccggacacc 5907868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1794621 - 1794665
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||||||| || |||||||| || |||||    
T  1794621 caatgcataatatatgcaagatccggggttcaaacctcgaccacc 1794665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8210421 - 8210377
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    ||||||||||||||| |||| |||||| ||| |||||||||||||    
T  8210421 caatgcataatatatacaaggtccagggttcgaaccccggccacc 8210377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8736460 - 8736504
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||| ||||||||| ||| || |||||||||||||||||    
T  8736460 caatgcataaaatatgcaaggtccggggttcaaaccccggccacc 8736504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25532998 - 25533038
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggc 41  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  25532998 caatgcataatatatgcaaggtccggggttcaaaccccggc 25533038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27449481 - 27449445
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccc 37  Q
    |||||||||||||||||||||| |||| |||||||||    
T  27449481 caatgcataatatatgcaagattcagggttcaaaccc 27449445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32962588 - 32962632
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||| ||||||||| |||||| ||||||||||| |||||    
T  32962588 caatgcataaaatatgcaaggtccagggttcaaaccccgaccacc 32962632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34521226 - 34521182
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || |||||||| ||||||||    
T  34521226 caatgcataatatatgcaaggtccggggttcaaacctcggccacc 34521182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41973280 - 41973324
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || ||| |||||||||||||    
T  41973280 caatgcataatatatgcaaggtccggggttcgaaccccggccacc 41973324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 45140042 - 45139998
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||||  || ||||||||||||||    
T  45140042 caatgcataatatatgcaaggtccagagtttaaaccccggccacc 45139998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 50638952 - 50638908
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||||| ||| || ||||||||||    
T  50638952 caatgcataatatatgcaaggtccagggttcgaatcccggccacc 50638908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 33412118 - 33412159
Alignment:
Q  3 atgcataatatatgcaagatccaggattcaaaccccggccac 44  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  33412118 atgcataatatatgcaaggtccaggattcaaaccccggccac 33412159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 14474863 - 14474903
Alignment:
Q  5 gcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  14474863 gcataatatatgcaaggtccagggttcaaaccccggccacc 14474903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22522837 - 22522793
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || |||||||||||||||||    
T  22522837 caatgcataatatatgcaaggtccggggttcaaaccccggccacc 22522793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27219313 - 27219357
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||| ||||||||||| |||||||||| |||||||||||||||||    
T  27219313 caatacataatatatgtaagatccagggttcaaaccccggccacc 27219357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40715985 - 40715941
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || |||||||||||||||||    
T  40715985 caatgcataatatatgcaaggtccggggttcaaaccccggccacc 40715941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 37021407 - 37021364
Alignment:
Q  2 aatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||    
T  37021407 aatgcataatatatgcaagattcagggttcaaaccccgaccacc 37021364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6489032 - 6489076
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||  || |||||||||||||||||    
T  6489032 caatgcataatatatgcaaggtctggggttcaaaccccggccacc 6489076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6624801 - 6624845
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || ||| |||||||||||||    
T  6624801 caatgcataatatatgcaaggtccggggttcgaaccccggccacc 6624845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15889436 - 15889480
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| || ||| ||||||||||| |||||    
T  15889436 caatgcataatatatgcaaggtctagggttcaaaccccgaccacc 15889480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16701617 - 16701573
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    ||||| |||||||||||||| ||| |||||||||||||| |||||    
T  16701617 caatgaataatatatgcaaggtccgggattcaaaccccgaccacc 16701573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27086103 - 27086147
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    ||||| |||||||||||||| |||||| |||||||||| ||||||    
T  27086103 caatgtataatatatgcaaggtccagggttcaaaccccagccacc 27086147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40959027 - 40959071
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||||| |||| |||| |||||| |||||    
T  40959027 caatgcataatatatgcaagattcagggttcagaccccgaccacc 40959071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41630148 - 41630104
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| | | ||||||||||||||| ||||    
T  41630148 caatgcataatatatgcaaggttcgggattcaaaccccggtcacc 41630104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8881300 - 8881344
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||||| |||||||||||||||||    
T  8881300 caatgcataatatatgcaaggtccagggttcaaaccccggccacc 8881344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10601788 - 10601831
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccac 44  Q
    |||||||||||||||||||||| | |||||||||||||||||||    
T  10601788 caatgcataatatatgcaagattcgggattcaaaccccggccac 10601831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12748926 - 12748970
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || |||||||||||||||||    
T  12748926 caatgcataatatatgcaaggtccggggttcaaaccccggccacc 12748970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13286156 - 13286199
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||||||| || |||||||||||||||||    
T  13286156 caatgcataatatatgcaagatcc-gggttcaaaccccggccacc 13286199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32051568 - 32051524
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || |||||||||||||||||    
T  32051568 caatgcataatatatgcaaggtccggggttcaaaccccggccacc 32051524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 6235585 - 6235543
Alignment:
Q  3 atgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||| ||| ||| ||||||||||||||||||||    
T  6235585 atgcataatatatgtaaggtccgggattcaaaccccggccacc 6235543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18533694 - 18533731
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaacccc 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  18533694 caatgcataatatatgcaagatccggggttcaaacccc 18533731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 32286397 - 32286356
Alignment:
Q  4 tgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    ||||||||||||||||||| | || |||||||||||||||||    
T  32286397 tgcataatatatgcaagattcggggttcaaaccccggccacc 32286356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 444438 - 444482
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || || ||||||||||||||    
T  444438 caatgcataatatatgcaaggtccggggtttaaaccccggccacc 444482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15001311 - 15001267
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||| ||||||||| |||| | |||||||||||||||||    
T  15001311 caatgcataaaatatgcaaggtccaaggttcaaaccccggccacc 15001267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15020786 - 15020830
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    ||||| |||||||||||||||||| || ||||||||| |||||||    
T  15020786 caatgtataatatatgcaagatccggggttcaaaccctggccacc 15020830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19260615 - 19260571
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||| ||| ||| || |||||||||||||||||    
T  19260615 caatgcataatatatgtaaggtccggggttcaaaccccggccacc 19260571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23159466 - 23159510
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||||| | || ||||||||||| |||||    
T  23159466 caatgcataatatatgcaagattcggggttcaaaccccgaccacc 23159510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24696042 - 24696006
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccc 37  Q
    ||||||||||||||||||||||||  |||||||||||    
T  24696042 caatgcataatatatgcaagatccgagattcaaaccc 24696006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24838206 - 24838162
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||| ||||||||| ||| || |||||||||||||||||    
T  24838206 caatgcataaaatatgcaaggtccggggttcaaaccccggccacc 24838162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27587246 - 27587290
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||| ||||||||||| ||| || |||||||||||||||||    
T  27587246 caatgcatgatatatgcaaggtccggggttcaaaccccggccacc 27587290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29716736 - 29716692
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||| ||||||||||||||| ||| |||||||||| |||||||||    
T  29716736 caattcataatatatgcaaggtccgggattcaaactccggccacc 29716692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40167347 - 40167391
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    ||||||||||||||| |||| | | ||||||||||||||||||||    
T  40167347 caatgcataatatatacaaggttcgggattcaaaccccggccacc 40167391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 54877635 - 54877591
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||    
T  54877635 caatgcataatatatgcaagatctaggattcaaaacccggccacc 54877591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16304134 - 16304090
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| ||||||||||| ||||||||    
T  16304134 caatgcataatatatgcaaggtccgggattcaaaccgcggccacc 16304090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19588179 - 19588223
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||| ||||||||| |||||| |||||||||||||||||    
T  19588179 caatgcataaaatatgcaaggtccagggttcaaaccccggccacc 19588223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37921771 - 37921811
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggc 41  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  37921771 caatgcataatatatgcaaggtccgggattcaaaccccggc 37921811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 49042017 - 49041973
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || |||||||||||||||||    
T  49042017 caatgcataatatatgcaaggtccggggttcaaaccccggccacc 49041973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 31692667 - 31692624
Alignment:
Q  2 aatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||| |||| |||||||||||||| |||||    
T  31692667 aatgcataatatatgcaacatcctggattcaaaccccgaccacc 31692624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 43078698 - 43078737
Alignment:
Q  6 cataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  43078698 cataatatatgcaagatccaggattcgaatcccggccacc 43078737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3936652 - 3936696
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || ||| |||||||||||||    
T  3936652 caatgcataatatatgcaaggtccggggttcgaaccccggccacc 3936696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7230305 - 7230349
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || |||||||| ||||||||    
T  7230305 caatgcataatatatgcaaggtccggggttcaaacctcggccacc 7230349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8495012 - 8495056
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||||||| |  |||||| ||||||||||    
T  8495012 caatgcataatatatgcaagatcccgagttcaaatcccggccacc 8495056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 11198357 - 11198397
Alignment:
Q  5 gcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||| ||| || |||||||||||||||||    
T  11198357 gcataatatatgcaaggtccggggttcaaaccccggccacc 11198397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11949799 - 11949755
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || ||||||||||| |||||    
T  11949799 caatgcataatatatgcaaggtccggggttcaaaccccgaccacc 11949755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19479513 - 19479469
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || ||||||||||| |||||    
T  19479513 caatgcataatatatgcaaggtccggggttcaaaccccgaccacc 19479469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21318289 - 21318245
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| || ||| ||||||||||| |||||    
T  21318289 caatgcataatatatgcaaggtctagggttcaaaccccgaccacc 21318245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 23809978 - 23810018
Alignment:
Q  5 gcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||| | |||| |||||||||||||||||    
T  23809978 gcataatatatgcaaggttcagggttcaaaccccggccacc 23810018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 38453290 - 38453334
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||||| ||| |||||| ||||||    
T  38453290 caatgcataatatatgcaaggtccagggttcgaaccccagccacc 38453334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 50362175 - 50362131
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||||| ||||||||  |||||||    
T  50362175 caatgcataatatatgcaaggtccagggttcaaaccttggccacc 50362131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 54857651 - 54857607
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||| ||||||||| ||| || |||||||||||||||||    
T  54857651 caatgcataaaatatgcaaggtccggggttcaaaccccggccacc 54857607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 56551628 - 56551584
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||  | |||||||||||||||||    
T  56551628 caatgcataatatatgcaaggtccgaggttcaaaccccggccacc 56551584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 20200730 - 20200774
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||||| |||||||||||||||||    
T  20200730 caatgcataatatatgcaaggtccagggttcaaaccccggccacc 20200774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 18693698 - 18693655
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccac 44  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||    
T  18693698 caatgcataatatatgcaagatccagggttcaaaccccgaccac 18693655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 660858 - 660814
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||||| ||||||||||| |||||    
T  660858 caatgcataatatatgcaaggtccagggttcaaaccccgaccacc 660814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11931630 - 11931674
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||||||| |||| |||| ||||||||||    
T  11931630 caatgcataatatatgcaagatccgggatacaaaacccggccacc 11931674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23250356 - 23250312
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||||| ||||||||||| |||||    
T  23250356 caatgcataatatatgcaaggtccagggttcaaaccccgaccacc 23250312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29544652 - 29544696
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || |||||||||||||||||    
T  29544652 caatgcataatatatgcaaggtccggggttcaaaccccggccacc 29544696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32204569 - 32204613
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    ||||||||||||||||||||||||| ||||| |||| ||||||||    
T  32204569 caatgcataatatatgcaagatccaagattcgaacctcggccacc 32204613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37830738 - 37830782
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||| |||||||||| ||||||||| |||||||||||||||||||    
T  37830738 caatacataatatatacaagatccaagattcaaaccccggccacc 37830782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44526153 - 44526197
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||| ||||| ||| ||||||||||||||||||||    
T  44526153 caatgcataatatacgcaaggtccgggattcaaaccccggccacc 44526197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 7262831 - 7262874
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccac 44  Q
    ||||||||||||||| ||||||| | ||||||||||||||||||    
T  7262831 caatgcataatatatacaagatcaaagattcaaaccccggccac 7262874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 27848184 - 27848227
Alignment:
Q  2 aatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    ||||||||||||||||||| ||| || |||||||||||||||||    
T  27848184 aatgcataatatatgcaaggtccggggttcaaaccccggccacc 27848227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 42791320 - 42791363
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccac 44  Q
    |||||||||||||||||||| ||| || ||||||||||||||||    
T  42791320 caatgcataatatatgcaaggtccggggttcaaaccccggccac 42791363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3903879 - 3903837
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggcca 43  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||    
T  3903879 caatgcataatatatgcaaggtccaggattaaaatcccggcca 3903837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 8728846 - 8728888
Alignment:
Q  3 atgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||| |||||||||||||||| ||||||||||| |||||    
T  8728846 atgcataaaatatgcaagatccagggttcaaaccccgaccacc 8728888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 10735865 - 10735823
Alignment:
Q  3 atgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||| ||| || |||||||||||||||||    
T  10735865 atgcataatatatgcaaggtccggggttcaaaccccggccacc 10735823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 961128 - 961164
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccc 37  Q
    |||||||||||||||||||| |||| |||||||||||    
T  961128 caatgcataatatatgcaaggtccatgattcaaaccc 961164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11175810 - 11175854
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||||||  || ||||||| |||||||||    
T  11175810 caatgcataatatatgcaagatctggggttcaaactccggccacc 11175854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18324930 - 18324894
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccc 37  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  18324930 caatgcataatatatgcaagatctaggattcgaaccc 18324894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24579704 - 24579660
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||||| ||||||| | |||||||    
T  24579704 caatgcataatatatgcaaggtccagggttcaaactctggccacc 24579660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24592882 - 24592838
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||  || |||||||||||||||||    
T  24592882 caatgcataatatatgcaaggtctggggttcaaaccccggccacc 24592838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25186278 - 25186234
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || |||||||||| ||||||    
T  25186278 caatgcataatatatgcaaggtccggggttcaaaccccagccacc 25186234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25612329 - 25612285
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| |||||||| ||||| |||||    
T  25612329 caatgcataatatatgcaaggtccgggattcaacccccgaccacc 25612285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31815923 - 31815879
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || ||||||||||| |||||    
T  31815923 caatgcataatatatgcaaggtccggggttcaaaccccgaccacc 31815879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33567686 - 33567730
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||| | ||||||||| |||||| |||||||||||||||||    
T  33567686 caatgcatgaaatatgcaagttccagggttcaaaccccggccacc 33567730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41748792 - 41748748
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||| ||||| ||||||| |||||||||||||| |||||    
T  41748792 caatgcataaaatatgtaagatccgggattcaaaccccgaccacc 41748748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3830093 - 3830137
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||||| |||||||||| ||||||    
T  3830093 caatgcataatatatgcaaggtccagggttcaaaccccagccacc 3830137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27462472 - 27462428
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || |||||||||||||||||    
T  27462472 caatgcataatatatgcaaggtccggggttcaaaccccggccacc 27462428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 14046646 - 14046603
Alignment:
Q  2 aatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    ||||||||||||||||||||| | || |||||||||||||||||    
T  14046646 aatgcataatatatgcaagatacggggttcaaaccccggccacc 14046603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 14356676 - 14356633
Alignment:
Q  2 aatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    ||||||||||||||||||||| | || |||||||||||||||||    
T  14356676 aatgcataatatatgcaagatacggggttcaaaccccggccacc 14356633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 21322201 - 21322244
Alignment:
Q  2 aatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||| |||||||| |||||| |||||||||||||||||    
T  21322201 aatgcataatgtatgcaaggtccagggttcaaaccccggccacc 21322244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 21554969 - 21554926
Alignment:
Q  2 aatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    ||||| ||||||||||||| |||||||||||||||||| |||||    
T  21554969 aatgcttaatatatgcaaggtccaggattcaaaccccgaccacc 21554926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 22267606 - 22267644
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccg 39  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  22267606 caatgcataatatatgtaagattcaggattcaaaccccg 22267644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 10242506 - 10242543
Alignment:
Q  2 aatgcataatatatgcaagatccaggattcaaaccccg 39  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  10242506 aatgcataatatatgcaaggtccagggttcaaaccccg 10242543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38374227 - 38374186
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggcc 42  Q
    ||||||||| |||||||||| |||||| ||||||||||||||    
T  38374227 caatgcatagtatatgcaaggtccagggttcaaaccccggcc 38374186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10326979 - 10327022
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||||| |||||||| ||||||||    
T  10326979 caatgcataatatatgcaaggtccagg-ttcaaacctcggccacc 10327022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18023704 - 18023748
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||||| ||||||| ||| |||||    
T  18023704 caatgcataatatatgcaaggtccagggttcaaactccgaccacc 18023748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19416539 - 19416583
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||| ||||||||| ||| || |||||||||||||||||    
T  19416539 caatgcataaaatatgcaaggtccggggttcaaaccccggccacc 19416583  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19599170 - 19599214
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || ||||||||||| |||||    
T  19599170 caatgcataatatatgcaaggtccggggttcaaaccccgaccacc 19599214  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27772269 - 27772233
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccc 37  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  27772269 caatgcataatatatgcaagatctaggattcgaaccc 27772233  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33473557 - 33473513
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||||| ||| ||||| |||||||    
T  33473557 caatgcataatatatgcaaggtccagggttccaaccctggccacc 33473513  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37930069 - 37930113
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||| ||| | |||||||||||||| |||||    
T  37930069 caatgcataatatatgcaggattcgggattcaaaccccgaccacc 37930113  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42829270 - 42829226
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || ||||||| |||||||||    
T  42829270 caatgcataatatatgcaagctccggggttcaaactccggccacc 42829226  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 47155140 - 47155096
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||||| ||| |||||||| ||||    
T  47155140 caatgcataatatatgcaaggtccagggttcgaaccccggacacc 47155096  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8569734 - 8569778
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || |||||||||||||||||    
T  8569734 caatgcataatatatgcaaggtccggggttcaaaccccggccacc 8569778  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2692240 - 2692283
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccac 44  Q
    ||||||||||||||||||||||||  ||||||||||| ||||||    
T  2692240 caatgcataatatatgcaagatccgagattcaaaccctggccac 2692283  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 8393787 - 8393745
Alignment:
Q  2 aatgcataatatatgcaagatccaggattcaaaccccggccac 44  Q
    ||||||||| ||||||||| |||||| ||||||||||||||||    
T  8393787 aatgcataaaatatgcaaggtccaggtttcaaaccccggccac 8393745  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18253375 - 18253338
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaacccc 38  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  18253375 caatgcataatatatgcaaggtccagggttcaaacccc 18253338  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3808154 - 3808110
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||  |||||||||||| ||||||    
T  3808154 caatgcataatatatgcaaggtccgagattcaaaccccagccacc 3808110  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4855581 - 4855625
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||| ||||| ||||| |||||||||||||||| |||||    
T  4855581 caatgcataaaatatgtaagattcaggattcaaaccccgaccacc 4855625  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27080734 - 27080690
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||  |||||||||||||| |||||    
T  27080734 caatgcataatatatgcaagctctgggattcaaaccccgaccacc 27080690  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29740507 - 29740551
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||| ||||| ||| || |||||||||||||||||    
T  29740507 caatgcataatatacgcaaggtccggggttcaaaccccggccacc 29740551  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33824906 - 33824950
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| || |||||||| ||||||||    
T  33824906 caatgcataatatatgcaaggtccggggttcaaacctcggccacc 33824950  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34474252 - 34474296
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||| | ||| |||||||||||||    
T  34474252 caatgcataatatatgcaaggtccatggttcgaaccccggccacc 34474296  T

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Target: scaffold1619 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1619
Description:

Target: scaffold1619; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1056 - 1093
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaacccc 38  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  1056 caatgcataatatatgcaaggtccgggattcaaacccc 1093  T

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Target: scaffold0674 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6739 - 6783
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| |||| | ||| |||||||||||||    
T  6739 caatgcataatatatgcaagttccatggttcgaaccccggccacc 6783  T

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Target: scaffold0025 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 64243 - 64287
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||| ||| |||||| ||||||| |||||    
T  64243 caatgcataatatatgcaaggtccgggattcgaaccccgaccacc 64287  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48672 - 48716
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||||||||||||  ||| ||||||||||||||| ||||    
T  48672 caatgcataatatatgcaaagtccgggattcaaaccccggacacc 48716  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 185288 - 185332
Alignment:
Q  1 caatgcataatatatgcaagatccaggattcaaaccccggccacc 45  Q
    |||||||||| ||||||||||||| || |||||||||||| ||||    
T  185288 caatgcataaaatatgcaagatccggggttcaaaccccggtcacc 185332  T

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