View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_68 (Length: 241)
Name: NF9778_low_68
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 54 - 224
Target Start/End: Original strand, 31195210 - 31195381
Alignment:
| Q |
54 |
ctcttttttatgaa-aaaatacaagatatgtcccagggttaattaattagagttaaggaaaacttcacaccgtaaaatattgacagatatacttacctat |
152 |
Q |
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| T |
31195210 |
ctcttttttatgaacaaaatacaagatatgtcccagggttaattaattagagttaaggaaaacttcacagcgtaaagtattgatagatatacttacctat |
31195309 |
T |
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| Q |
153 |
tatccatttgaaagatccttacatcgtttcggagatttgaatctggattcttagtgaaatttgaatggaatt |
224 |
Q |
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| T |
31195310 |
tatccatttgaaagatccttacatcgtttcagagatttgaatccgaattcttagtgaaatttgaatggaatt |
31195381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 30866148 - 30866030
Alignment:
| Q |
106 |
taaggaaa-acttcacaccgtaaaatattgacagatatacttacctattatccatttgaaagatccttacatcgtttcggagatttgaatctggattctt |
204 |
Q |
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|||||||| |||||| | |||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30866148 |
taaggaaagacttcagagcgtaaagtattgacatatatacttatctattatccatttgaaagatccttacatcgtttcggagatttgaatccggattctt |
30866049 |
T |
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| Q |
205 |
agtgaaatttgaatggaatt |
224 |
Q |
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|||| |||||||||||||| |
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| T |
30866048 |
-gtgacatttgaatggaatt |
30866030 |
T |
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