View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_7 (Length: 538)
Name: NF9778_low_7
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 59 - 533
Target Start/End: Complemental strand, 35450161 - 35449686
Alignment:
| Q |
59 |
ttataattactatgatcacttattaattaagttgttgcagcagttaatagattcatttcaagccttccattctctattactaagtttctttttccccttc |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35450161 |
ttataattactatgatcacttattaattaagttgttgcagcagttaatagattcatttcaagccttccattctctattactaagtttctttttccccttc |
35450062 |
T |
|
| Q |
159 |
atcttttcagtttggcaaaggcttgaagaacaaaatccagagttcttccaagcttactatacaagattggcgttgaagaagcaaatagaggaattcaaca |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35450061 |
atcttttcagtttggcaaaggcttgaagaacaaaatccagagttcttccaagcttactatacaagattggcgttgaagaagcaaatagaggaattcaaca |
35449962 |
T |
|
| Q |
259 |
aattaatgcataaacaaaaggaattaatggtctcagagcaagctaaagttgcatcactaccaacctctaatggatttcattatcatgatgtttcatcgct |
358 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35449961 |
aattaatgcataaacaaaaggaattaatagactcagagcaagctaaagttgcatcactacctacctctaatggatttcattatcatgatgtttcatcgct |
35449862 |
T |
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| Q |
359 |
acccacttctaatggaacacctacccccgctagtaagtttctacctccaaaaatattgttttcaccgttttcactagattgtgtttttcatcggtatcaa |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35449861 |
acccacttctaatggaacacctacccccgctagtaagtttctacctccaaaaatattgttttcaccgttttcactagattgtgtttttcatcggtatcaa |
35449762 |
T |
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| Q |
459 |
gtcc-nnnnnnnnncacaagtataataatttctgaactgaatttcattaaaattctctttatttatctctgcttct |
533 |
Q |
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| T |
35449761 |
gtccttttttttttcacaagtataataatttctgaactgaatttcattaaaattctctttatttatctctggttct |
35449686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 157 - 293
Target Start/End: Complemental strand, 35441622 - 35441486
Alignment:
| Q |
157 |
tcatcttttcagtttggcaaaggcttgaagaacaaaatccagagttcttccaagcttactatacaagattggcgttgaagaagcaaatagaggaattcaa |
256 |
Q |
| |
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|||| |||||||||||||||| |||| | ||||||||||| ||||||||| ||||||| ||||||||||||||||||||| | ||||||||| ||||||| |
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| T |
35441622 |
tcattttttcagtttggcaaaagcttaatgaacaaaatcctgagttcttcaaagcttattatacaagattggcgttgaagcaacaaatagagaaattcaa |
35441523 |
T |
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| Q |
257 |
caaattaatgcataaacaaaaggaattaatggtctca |
293 |
Q |
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| T |
35441522 |
tgaattgttggaaaaacaaaaagaattaatggactca |
35441486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 139 - 288
Target Start/End: Original strand, 1864714 - 1864863
Alignment:
| Q |
139 |
taagtttctttttccccttcatcttttcagtttggcaaaggcttgaagaacaaaatccagagttcttccaagcttactatacaagattggcgttgaagaa |
238 |
Q |
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||||||||||||||| || |||||| ||||||||||| |||| ||||| ||||||| |||||||| |||||||| || |||||||||||||||||| | |
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| T |
1864714 |
taagtttctttttccttctcgtctttttagtttggcaaaagcttaaagaagaaaatcctgagttctttcaagcttattacacaagattggcgttgaagca |
1864813 |
T |
|
| Q |
239 |
gcaaatagaggaattcaacaaattaatgcataaacaaaaggaattaatgg |
288 |
Q |
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| T |
1864814 |
acaaattgaacagttcaacacattgttggataaataaaagaaattaatgg |
1864863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 7239256 - 7239158
Alignment:
| Q |
147 |
tttttcccct-tcatcttttcagtttggcaaaggcttgaagaacaaaatccagagttcttccaagcttactatacaagattggcgttgaagaagcaaat |
244 |
Q |
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|||||||||| |||||||| |||| ||| ||| |||||||||||| ||| | || |||||| ||||||| ||||||||| ||| ||||||| ||||||| |
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| T |
7239256 |
tttttcccctctcatctttgcagtctggaaaaagcttgaagaacataatgctgaattcttcaaagcttattatacaagagtggtgttgaagcagcaaat |
7239158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 400
Target Start/End: Complemental strand, 51575844 - 51575724
Alignment:
| Q |
280 |
aattaatggtctcagagcaagctaaagttgcatcactaccaacctctaatggatttcattatcatgatgtttcatcgctacccacttctaatggaacacc |
379 |
Q |
| |
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|||||| |||||| || ||| | | ||||||||| ||||| | |||||||||||||||| |||||| |||| |||| |||| | |||||||||| ||| |
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| T |
51575844 |
aattaacggtctcggaacaaaccatagttgcatctctacctatctctaatggatttcatcatcatgttgttccatcactacaaaattctaatggatcaca |
51575745 |
T |
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| Q |
380 |
tacccccgctagtaagtttct |
400 |
Q |
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|| || ||||||||| |||| |
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| T |
51575744 |
tatccatgctagtaagattct |
51575724 |
T |
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