View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_71 (Length: 240)
Name: NF9778_low_71
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_71 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 3269974 - 3270197
Alignment:
| Q |
17 |
ataagtatgccagagaagataggtaatgagttaggaatattgggaagaccaaattaaattgaacaagaaataagtggaaatgaatgagtccaagtacttt |
116 |
Q |
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| T |
3269974 |
ataagtatgccagagaagataggtaatgagttaggaatattgggaagaccaaattaaattgaacaagaaataagtggaaatgaatgagtccaagtacttt |
3270073 |
T |
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| Q |
117 |
gtgtttgtttgtctgtagtacagttttctggtggagattagtttgcttctgttcaatctatccgtttcgtttacgacacttttacttggaatacctctta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3270074 |
gtgtttgtttgtctgtagtacagttttctggtggagattagtttgcttctgttcaatctatccgtttcgtttacgacacttttacttggaatacctctta |
3270173 |
T |
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| Q |
217 |
attaactttagttacttaatcata |
240 |
Q |
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|||||||||||||| ||||||||| |
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| T |
3270174 |
attaactttagttagttaatcata |
3270197 |
T |
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