View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_72 (Length: 240)
Name: NF9778_low_72
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_72 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 27243705 - 27243930
Alignment:
| Q |
1 |
ttctaccgtggaatgattcttcctataattttcatctcttnnnnnnnngtcattagaggattgaatttcatggtaatactaaactcaaccaaaattttga |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27243705 |
ttctacagtggaatgattcttcctataattttcatctcttaaaaaaaagtcattagaggattgaatttcatggtaatactaaactcaaccaaaattttga |
27243804 |
T |
|
| Q |
101 |
gcacgtatgatccacccnnnnnnnntataatccttaggggcgatggagcaatcctcatatatattaattatttgattcatcatttgttaagattaaaatt |
200 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27243805 |
gcacgtatgatccatccaaaaaaaatataatccttaggggcgatggagcaatcctcatatatattaattatttgattcatcatttgttaagattaatatt |
27243904 |
T |
|
| Q |
201 |
ttgttatgattcaatattgctttctg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
27243905 |
ttgttatgattcaatattgctttctg |
27243930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 27255280 - 27255505
Alignment:
| Q |
1 |
ttctaccgtggaatgattcttcctataattttcatctcttnnnnnnnngtcattagaggattgaatttcatggtaatactaaactcaaccaaaattttga |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27255280 |
ttctacagtggaatgattcttcctataattttcatctcttaaaaaaaagtcattagaggattgaatttcatggtaatactaaactcaaccaaaattttga |
27255379 |
T |
|
| Q |
101 |
gcacgtatgatccacccnnnnnnnntataatccttaggggcgatggagcaatcctcatatatattaattatttgattcatcatttgttaagattaaaatt |
200 |
Q |
| |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27255380 |
gcacgtatgatccatccaaaaaaaatataatccttaggggcgatggagcaatcctcatatatattaattatttgattcatcatttgttaagattaatatt |
27255479 |
T |
|
| Q |
201 |
ttgttatgattcaatattgctttctg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
27255480 |
ttgttatgattcaatattgctttctg |
27255505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 42094533 - 42094477
Alignment:
| Q |
58 |
ggattgaatttcatggtaatactaaactcaaccaaaattttgagcacgtatgatcca |
114 |
Q |
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||||| |||||||||| ||| | |||||||||||||||||||||| | |||||||| |
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|
| T |
42094533 |
ggatttaatttcatggcaatgttgaactcaaccaaaattttgagcatgcatgatcca |
42094477 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 1053764 - 1053546
Alignment:
| Q |
8 |
gtggaatgattcttcctataattttcatctcttnnnnnnnngtcattagaggattgaatttcatggtaatactaaactcaaccaaaattttgagcacgta |
107 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1053764 |
gtggaatgattcttcctataattttcatctcttaaaaaaaagtcattagaggattgaatttcatggtaatactaaactcaaccaaaattttgagcacgta |
1053665 |
T |
|
| Q |
108 |
tgatccacccnnnnnnnntataatccttaggggcgatggagcaatcctcatatatattaattatttgattcatcatttgttaagattaaaattttgttat |
207 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1053664 |
tgatccatccaaaaaaaatataatccttaggggcgatggagcaatcctcatatatattaattatttgattcatcatttgttaagattaatattttgttat |
1053565 |
T |
|
| Q |
208 |
gattcaatattgctttctg |
226 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
1053564 |
gattcaatattgctttctg |
1053546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 13925144 - 13925194
Alignment:
| Q |
64 |
aatttcatggtaatactaaactcaaccaaaattttgagcacgtatgatcca |
114 |
Q |
| |
|
||||||||||| || |||||||||||||||| ||| ||||||||||||||| |
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|
| T |
13925144 |
aatttcatggtgatgctaaactcaaccaaaagtttaagcacgtatgatcca |
13925194 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 4059436 - 4059374
Alignment:
| Q |
52 |
attagaggattgaatttcatggtaatactaaactcaaccaaaattttgagcacgtatgatcca |
114 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||||||||||||| ||| ||||||||||||||| |
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|
| T |
4059436 |
attataggattaaatttcatggtaatgttaaactcaaccaaaagtttaagcacgtatgatcca |
4059374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 33087255 - 33087199
Alignment:
| Q |
58 |
ggattgaatttcatggtaatactaaactcaaccaaaattttgagcacgtatgatcca |
114 |
Q |
| |
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||||| |||||||||| ||| | |||||||||||||||||||||| | |||||||| |
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|
| T |
33087255 |
ggattaaatttcatggcaatgttgaactcaaccaaaattttgagcatgcatgatcca |
33087199 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 47571728 - 47571672
Alignment:
| Q |
58 |
ggattgaatttcatggtaatactaaactcaaccaaaattttgagcacgtatgatcca |
114 |
Q |
| |
|
||||| |||||||||| ||| | |||||||||||||||||||||| | |||||||| |
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|
| T |
47571728 |
ggatttaatttcatggcaatgttgaactcaaccaaaattttgagcatgcatgatcca |
47571672 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 44987072 - 44987128
Alignment:
| Q |
58 |
ggattgaatttcatggtaatactaaactcaaccaaaattttgagcacgtatgatcca |
114 |
Q |
| |
|
||||| |||||||||| ||| | |||||||||||||||||||||| | |||||||| |
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|
| T |
44987072 |
ggattaaatttcatggcaatgttgaactcaaccaaaattttgagcatgcatgatcca |
44987128 |
T |
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