View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_74 (Length: 239)
Name: NF9778_low_74
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_74 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 11765371 - 11765150
Alignment:
| Q |
1 |
caatttcacaatacatatattcggtaaagaattattcaacagtaataaataatgctataaataaatagaccatttcctaccatatttggatgggttgttt |
100 |
Q |
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| T |
11765371 |
caatttcacaatacatatattcggtaaagaattattcaacagtaataaataatgctataaataaatataccattacctaccatatttggatgggttgttt |
11765272 |
T |
|
| Q |
101 |
atgaattcataagaaaagtcaaagaaattgaaatatgaatatttaaatcctttgatctgtttctttaacttgttaagttgcacagaaagcacattgttat |
200 |
Q |
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| T |
11765271 |
atgaattcataagaaaagtcaaagaaattgaaatatgaatatttaaatcctttgatctgtttctttaacttgttaagttgcacagaaagcacattgttat |
11765172 |
T |
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| Q |
201 |
gcagtttggcaagtgctgaaaa |
222 |
Q |
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| T |
11765171 |
gcagtttggcaagtgctgaaaa |
11765150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 179
Target Start/End: Complemental strand, 11779897 - 11779762
Alignment:
| Q |
44 |
aataaataatgctataaataaatagaccatttcctaccatatttggatgggttgtttatgaattcataagaaaagtcaaagaaattgaaatatgaatatt |
143 |
Q |
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| T |
11779897 |
aataaataatgctaaaaataaatatgacataacctaccaaatttggaagggttccttatgacttcaaaagatagatgatagaaatcaaaatatgaatatt |
11779798 |
T |
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| Q |
144 |
taaatcctttgatctgtttctttaacttgttaagtt |
179 |
Q |
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| T |
11779797 |
taaatcctttgatcttttttgttaaattcttaagtt |
11779762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 11785167 - 11785052
Alignment:
| Q |
53 |
tgctataaataaatagaccatttcctaccatatttggatgggttgtttatgaattcataagaaaagtcaaagaaattgaaatatgaatatttaaatcctt |
152 |
Q |
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| T |
11785167 |
tgctaaaaataaatataccataacttaccaaatttggaagggttgcttatgacttcaaaagatagatgatataaatcaaaatatgaatatttaaatcctt |
11785068 |
T |
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| Q |
153 |
tgatctgtttctttaa |
168 |
Q |
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| T |
11785067 |
tgatctgtttcgttaa |
11785052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 11771286 - 11771230
Alignment:
| Q |
135 |
atgaatatttaaatcctttgatctgtttctttaacttgttaagttgcacagaaagca |
191 |
Q |
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| T |
11771286 |
atgaatatttaaatcctttgatctctttggttaacttctcaagttcctcagaaagca |
11771230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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