View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9778_low_75 (Length: 239)
Name: NF9778_low_75
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_75 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 81 - 239
Target Start/End: Original strand, 25763424 - 25763579
Alignment:
| Q |
81 |
tttcaacctcagcattatagaacatacgaatgaagtataactctcttaatgttttttctttggctagataacagccaaacatacttaaccctgatggccc |
180 |
Q |
| |
|
|||||| |||| |||||||||||||| |||||| |||||||||||||| ||||| |||||||||||| ||| || | | | |||||| |||| |||| |
|
|
| T |
25763424 |
tttcaatctcaccattatagaacatagaaatgaaatataactctcttaacgttttatctttggctagaaaaccgctatatacacttaatcctgctggc-- |
25763521 |
T |
|
| Q |
181 |
tcttcttggaacttcagccaacacttcagcctttggaggtccattaatggagtctttaa |
239 |
Q |
| |
|
|||||||||| |||| |||| |||||||||||||||||||||||| | |||||||||| |
|
|
| T |
25763522 |
-cttcttggaaattcacccaatacttcagcctttggaggtccattagttgagtctttaa |
25763579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 237
Target Start/End: Original strand, 25746931 - 25747071
Alignment:
| Q |
94 |
attatagaacatacgaatgaagtataactctcttaatgttttttctttggctagataacagccaaacatacttaaccctgatggccctcttcttggaact |
193 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| ||||| |||||||||||| ||| | | | |||| ||| || ||||| ||||||||| | |
|
|
| T |
25746931 |
attatagtacatagaaatgaagtataactctcttaacgttttatctttggctagaaaactgatatatgaacttgaccttgctggcc---ttcttggaaat |
25747027 |
T |
|
| Q |
194 |
tcagccaacacttcagcctttggaggtccattaatggagtcttt |
237 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25747028 |
ttagccaacacttcagcctttggaggtccattagtggagtcttt |
25747071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 237
Target Start/End: Original strand, 25755450 - 25755630
Alignment:
| Q |
54 |
tgaaacgttcagagaaaacacgtcgtctttcaacctcagcattatagaacatacgaatgaagtataactctcttaatgttttttctttggctagataaca |
153 |
Q |
| |
|
||||||| || |||| ||||||| | |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||| || |
|
|
| T |
25755450 |
tgaaacggtcggagacaacacgttgagtttcaatctcacaattatagaacatagaaatgaagtataactctcttaacgttttatctttagctagaaaaat |
25755549 |
T |
|
| Q |
154 |
gccaaacatacttaaccctgatggccctcttcttggaacttcagccaacacttcagcctttggaggtccattaatggagtcttt |
237 |
Q |
| |
|
|| | | |||| | |||| ||| ||||||||| |||||||||||||| |||||| |||||||||||| |||||||||| |
|
|
| T |
25755550 |
gcaatatgaacttgatcctgccggc---attcttggaaattcagccaacacttgagccttcggaggtccattagtggagtcttt |
25755630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 25733037 - 25733102
Alignment:
| Q |
83 |
tcaacctcagcattatagaacatacgaatgaagtataactctcttaatgttttttctttggctaga |
148 |
Q |
| |
|
|||| |||| |||||||||||| | ||||| ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
25733037 |
tcaatctcaccattatagaacacataaatgaggtataactctcttaacgttttatctttggctaga |
25733102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 239
Target Start/End: Original strand, 25740738 - 25740891
Alignment:
| Q |
83 |
tcaacctcagcattatagaacatacgaatgaagtataactctcttaatgttttttctttggctagataacagccaaacatacttaaccctgatggccctc |
182 |
Q |
| |
|
|||| |||| |||||||||||| | ||||| ||||||||||||||| |||| |||||||||||| ||| || | ||||| | |||| |||| | |
|
|
| T |
25740738 |
tcaatctcaccattatagaacacagaaatgaggtataactctcttaacattttatctttggctagaaaactgctatgtatactcgatcctgctggcgc-- |
25740835 |
T |
|
| Q |
183 |
ttcttggaacttcagccaacacttcagcctttggaggtccattaatggagtctttaa |
239 |
Q |
| |
|
|||||||| |||||| |||||||||||||| ||||| |||| |||| ||||||| |
|
|
| T |
25740836 |
-tcttggaagttcagctaacacttcagccttccgaggtgcattggtggaatctttaa |
25740891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 30149374 - 30149336
Alignment:
| Q |
199 |
caacacttcagcctttggaggtccattaatggagtcttt |
237 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30149374 |
caacactttagcctttggaggtccattaatggagtcttt |
30149336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 30155706 - 30155668
Alignment:
| Q |
199 |
caacacttcagcctttggaggtccattaatggagtcttt |
237 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30155706 |
caacactttagcctttggaggtccattaatggagtcttt |
30155668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 30154113 - 30154075
Alignment:
| Q |
199 |
caacacttcagcctttggaggtccattaatggagtcttt |
237 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
30154113 |
caacactttagcctttggaggtccattaacggagtcttt |
30154075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University