View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_79 (Length: 231)
Name: NF9778_low_79
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_79 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 27568392 - 27568192
Alignment:
| Q |
16 |
tcttcttctaagctcttactctctcctatatagcaggtgtatataatgaagggatgaagatgaaagcaagctcagatgccaaaggatatttatagagttg |
115 |
Q |
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| T |
27568392 |
tcttcttctaagctcttactctctcctatatagcaggtgtatataatgaagggatgaagatgaaagaaagctcagatgccaaaggatatttatagagttg |
27568293 |
T |
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| Q |
116 |
attctaccatctagaattaaaagttattaccactcatataatggtcattcaaggccattaagcctgaggccattccacaactataactcccctgacctat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27568292 |
attctaccatctagaattaaaagttattaccactcatataatggtcattcaaggccattaagcctgaggccattccacaactataactcccctgacctat |
27568193 |
T |
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| Q |
216 |
g |
216 |
Q |
| |
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| |
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| T |
27568192 |
g |
27568192 |
T |
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