View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9778_low_8 (Length: 534)

Name: NF9778_low_8
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9778_low_8
NF9778_low_8
[»] chr2 (6 HSPs)
chr2 (17-248)||(40446261-40446492)
chr2 (58-260)||(12775852-12776058)
chr2 (156-247)||(32736622-32736713)
chr2 (9-235)||(16132200-16132421)
chr2 (14-132)||(14489839-14489960)
chr2 (44-90)||(40730546-40730592)
[»] chr1 (8 HSPs)
chr1 (17-247)||(336886-337115)
chr1 (17-247)||(21265848-21266079)
chr1 (58-247)||(6834836-6835027)
chr1 (62-248)||(43409076-43409264)
chr1 (15-247)||(37668424-37668655)
chr1 (26-248)||(9538285-9538505)
chr1 (114-248)||(29387719-29387851)
chr1 (114-248)||(36075267-36075397)
[»] chr3 (7 HSPs)
chr3 (9-247)||(46405479-46405721)
chr3 (58-247)||(16473987-16474177)
chr3 (44-248)||(5025531-5025741)
chr3 (58-248)||(16974238-16974428)
chr3 (34-235)||(52642422-52642626)
chr3 (63-235)||(15997337-15997509)
chr3 (203-247)||(11969201-11969245)
[»] scaffold0618 (1 HSPs)
scaffold0618 (9-247)||(5068-5311)
[»] chr5 (5 HSPs)
chr5 (350-519)||(13934042-13934211)
chr5 (58-247)||(535761-535951)
chr5 (59-189)||(42859667-42859797)
chr5 (114-248)||(40686270-40686400)
chr5 (25-90)||(38985521-38985587)
[»] chr6 (5 HSPs)
chr6 (17-249)||(10752682-10752918)
chr6 (58-247)||(25003853-25004043)
chr6 (58-247)||(34635217-34635407)
chr6 (437-515)||(10282608-10282686)
chr6 (207-247)||(19814811-19814851)
[»] chr7 (6 HSPs)
chr7 (17-247)||(10290297-10290527)
chr7 (58-247)||(15874975-15875165)
chr7 (35-247)||(48655490-48655696)
chr7 (26-247)||(9741511-9741727)
chr7 (119-191)||(12197420-12197492)
chr7 (44-91)||(1818761-1818808)
[»] scaffold0413 (1 HSPs)
scaffold0413 (17-188)||(7678-7849)
[»] chr4 (5 HSPs)
chr4 (58-247)||(40457650-40457841)
chr4 (34-247)||(49496891-49497101)
chr4 (63-235)||(41947301-41947476)
chr4 (63-186)||(10345631-10345754)
chr4 (143-247)||(8362652-8362755)
[»] chr8 (3 HSPs)
chr8 (9-247)||(21232858-21233095)
chr8 (63-219)||(42078429-42078585)
chr8 (94-173)||(41162274-41162353)
[»] scaffold0657 (1 HSPs)
scaffold0657 (121-247)||(5429-5556)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-101; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 40446492 - 40446261
Alignment:
Q  17 attttatcagaataaatataaataatctaagaaataattatcctatttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattcaat 116  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  40446492 attttattagaataaatataaataatttaagaaataattatcctatttttttcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaat 40446393  T
Q  117 taataaaccaaagtagagaatgtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaattatttataa 216  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||    
T  40446392 taataaaccaaagtaaagaatgtcaagattttgtaaagtttctcgcacataaaataaattgttgaacaactaagtggcaagccaagaaaattatttataa 40446293  T
Q  217 aaatacatatataaaatatcgggatgttacag 248  Q
    ||||||||||||||||||||||||||||||||    
T  40446292 aaatacatatataaaatatcgggatgttacag 40446261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 58 - 260
Target Start/End: Original strand, 12775852 - 12776058
Alignment:
Q  58 cctatttttgtcacaccaaaatgattaataaaaac---gaaatagatgaaatcatattcaattaataaaccaaagtagagaatgtcaagattttgtaaag 154  Q
    |||||||||||||||||||| ||||||| |||||    |||||||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||||||    
T  12775852 cctatttttgtcacaccaaattgattaaaaaaaaaaatgaaatagatggaatcagattcaattgataaaccaaagtaaagaatgtcaagattttgtaaag 12775951  T
Q  155 gttctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaatta-tttataaaaatacatatataaaatatcgggatgttacagtaagt 253  Q
     |||||||||||||||||| |||||||||| |||| ||| |||  ||||| |||| |||| ||||||||||||||||||||| ||||||||||| || ||    
T  12775952 tttctcgcacataaaataaattgttgaacagctaagtggaaagtcaagaagattattttaaaaaaatacatatataaaatattgggatgttacaataggt 12776051  T
Q  254 gtttgat 260  Q
    | |||||    
T  12776052 ggttgat 12776058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 32736622 - 32736713
Alignment:
Q  156 ttctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaattatttataaaaatacatatataaaatatcgggatgttaca 247  Q
    |||||||||||||||||| ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  32736622 ttctcgcacataaaataaattgttgaacaactaggtggcaagccaagaaaattatttataaaaatacatatataaaatttcgggatgttaca 32736713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 16132200 - 16132421
Alignment:
Q  9 agcagagaattttatcagaataaatataaataatctaagaaataattatcctatttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatca 108  Q
    |||| |||||||||| |||||||||||||||||| |||||| ||||  ||||| ||||  ||||||||| ||||||||||||| ||| || ||||||  |    
T  16132200 agcaaagaattttattagaataaatataaataatttaagaattaat--tcctacttttaccacaccaaattgattaataaaaa-gaactatatgaaagaa 16132296  T
Q  109 tattcaattaataaaccaaagtagagaatgtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaatt 208  Q
     |   ||||||| ||||||||||  ||||  ||||||||||  ||| |||||||||||||||||| ||||||||||| ||  || |||   ||||||||     
T  16132297 aacctaattaatgaaccaaagtaaggaatagcaagattttgcgaagtttctcgcacataaaataaattgttgaacaattaggtgacaactcaagaaaatc 16132396  T
Q  209 atttataaaaatacatatataaaatat 235  Q
    |||  ||||||||||||| ||||||||    
T  16132397 att--taaaaatacatatgtaaaatat 16132421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 14489960 - 14489839
Alignment:
Q  14 agaattttatcagaataaatataaataatctaagaaataattatcctatttttgt--cacaccaaaatgattaataaaaacgaaatagatgaaatcatat 111  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||  |||||| || ||| |||| ||||  ||||||||| ||| | ||    
T  14489960 agaattttattagaataaatataaataatttaagaaataattatcctatttttgttacacacctaattgagtaattaaaataaaatagatggaataaaat 14489861  T
Q  112 tc-aattaataaaccaaagtag 132  Q
    || ||||||| ||||| |||||    
T  14489860 tctaattaattaaccagagtag 14489839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 40730546 - 40730592
Alignment:
Q  44 taagaaataattatcctatttttgtcacaccaaaatgattaataaaa 90  Q
    ||||| ||||||||  |||||||||||||||||| ||||||||||||    
T  40730546 taagatataattattatatttttgtcacaccaaattgattaataaaa 40730592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 183; Significance: 9e-99; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 337115 - 336886
Alignment:
Q  17 attttatcagaataaatataaataatctaagaaataattatcctatttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattcaat 116  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  337115 attttattagaataaatataaataatttaagaaataattatcctattttt-tcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaat 337017  T
Q  117 taataaaccaaagtagagaatgtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaattatttataa 216  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||    
T  337016 taataaaccaaagtaaagaatgtcaagattttgtaaagtttctcgcacataaaataaattgttgaacaactaagtggcaagccaagaaaattatttataa 336917  T
Q  217 aaatacatatataaaatatcgggatgttaca 247  Q
    |||||||||||||||||||||||||||||||    
T  336916 aaatacatatataaaatatcgggatgttaca 336886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 21265848 - 21266079
Alignment:
Q  17 attttatcagaataaatataaataatctaagaaataattatcctatttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattcaat 116  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  21265848 attttattagaataaatataaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcaaattcaat 21265947  T
Q  117 taataaaccaaagtagagaatgtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaattattt-ata 215  Q
    |||||||||||||||  ||||  ||||||||||  ||| |||||||||||||||||| ||||||||||||||  || |||   |||||||| |||| | |    
T  21265948 taataaaccaaagtaaggaataccaagattttgcgaagtttctcgcacataaaataaattgttgaacaactaggtgacaactcaagaaaatcatttaaaa 21266047  T
Q  216 aaaatacatatataaaatatcgggatgttaca 247  Q
    |||||||||||||||||||| |||||||||||    
T  21266048 aaaatacatatataaaatattgggatgttaca 21266079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 58 - 247
Target Start/End: Complemental strand, 6835027 - 6834836
Alignment:
Q  58 cctatttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattcaattaataaaccaaagtagagaatgtcaagattttgtaaaggtt 157  Q
    ||||||||||||| |||||| |||||||||||||  ||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| ||    
T  6835027 cctatttttgtcataccaaattgattaataaaaattaaatagatgaaatcagattcaattaataaaccaaagtaaagaatgtgaagattttgtaaagttt 6834928  T
Q  158 ctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaattattt--ataaaaatacatatataaaatatcgggatgttaca 247  Q
    |||||||||||||||| ||  |||||||| || ||||||| ||||||||||||||  | ||||||||||||||||||||| |||||||||||    
T  6834927 ctcgcacataaaataaattaatgaacaaccaaatggcaagtaaagaaaattatttaaaaaaaaatacatatataaaatattgggatgttaca 6834836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 62 - 248
Target Start/End: Original strand, 43409076 - 43409264
Alignment:
Q  62 tttttgtcacaccaaaatgattaataaaaac-gaaatagatgaaatcatattcaattaataaaccaaagtagagaatgtcaagattttgtaaaggttctc 160  Q
    ||||| ||| |||||| |||||||||||||  |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | |||||    
T  43409076 tttttttcaaaccaaattgattaataaaaaatgaaatagatgaaatcagattcaattaataaaccaaagtaaagaatgtcaagattttgtaaggtttctc 43409175  T
Q  161 gcacataaaataagttgttgaacaactaattggcaagcaaagaaaattatttat-aaaaatacatatataaaatatcgggatgttacag 248  Q
    |||||||| |||  |||||||| || ||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43409176 gcacataatatagattgttgaataattaagtggcaagccaagaaaattatttataaaaaatacatatataaaatatcgggatgttacag 43409264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 37668424 - 37668655
Alignment:
Q  15 gaattttatcagaataaatataaataatctaagaaataattatcctatttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattca 114  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||| ||||  |||| |||| ||||||||||||| ||| || |||| |  | |   |    
T  37668424 gaattttattagaataaatataaataatttaagaaataattatcctactttttccacaacaaattgattaataaaaa-gaactatatgatagaaaaccta 37668522  T
Q  115 attaataaaccaaagtagagaatgtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaattatttat 214  Q
    |||||||||||||||||  ||||  ||||||||||| ||| ||||||||| |||||||| ||||||| ||| ||  |||||||  |||||| ||||||||    
T  37668523 attaataaaccaaagtaaggaataccaagattttgtgaagtttctcgcacgtaaaataaattgttgagcaattaggtggcaagtcaagaaagttatttat 37668622  T
Q  215 aaaaatacatatataaaatatcgggatgttaca 247  Q
    |||||||||| ||||||| |||  |||||||||    
T  37668623 aaaaatacatgtataaaagatcaagatgttaca 37668655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 26 - 248
Target Start/End: Original strand, 9538285 - 9538505
Alignment:
Q  26 gaataaatataaataatctaagaaataattatcctatttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattcaattaataaacc 125  Q
    ||||||| |||||| || |||| ||| ||||||||||||||||||||||||| |||||| |||||| ||| || ||||||  | ||  ||||||||| |     
T  9538285 gaataaaaataaatcatgtaaggaatgattatcctatttttgtcacaccaaattgattattaaaaatgaactatatgaaagaaaatctaattaataacca 9538384  T
Q  126 aaagtagagaatgtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaattatttataaaaatacata 225  Q
    || |||  ||||||||||||||||||||   | ||||||||||||||| ||||||| ||||||| || ||||  |||||||| |||  ||||| ||||||    
T  9538385 aacgtaaggaatgtcaagattttgtaaaaaatttcgcacataaaataaattgttgaccaactaagtgacaagtcaagaaaatcatt--taaaattacata 9538482  T
Q  226 tataaaatatcgggatgttacag 248  Q
    |||||||||| ||||||||||||    
T  9538483 tataaaatattgggatgttacag 9538505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 248
Target Start/End: Complemental strand, 29387851 - 29387719
Alignment:
Q  114 aattaataaaccaaagtagagaatgtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaattattta 213  Q
    ||||||||| | ||||||  ||||| ||||||||||||||  |||||||||||||||||| ||||||| ||||||| || ||||   ||||| | |||      
T  29387851 aattaataaccaaaagtaaggaatgccaagattttgtaaaatttctcgcacataaaataaattgttgaccaactaagtgacaagtcgagaaagtcatt-- 29387754  T
Q  214 taaaaatacatatataaaatatcgggatgttacag 248  Q
    ||||| |||||||||||||||| ||||||||||||    
T  29387753 taaaattacatatataaaatattgggatgttacag 29387719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 114 - 248
Target Start/End: Complemental strand, 36075397 - 36075267
Alignment:
Q  114 aattaataaaccaaagtagagaatgtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaattattta 213  Q
    ||||||||||||||||||  ||||| |||||| |||| ||  ||||||||||||   ||| ||||||| ||||||| || |||   |||||||| ||||     
T  36075397 aattaataaaccaaagtaaggaatgccaagatgttgtgaaatttctcgcacata---taaattgttgagcaactaagtgacaatttaagaaaatcattt- 36075302  T
Q  214 taaaaatacatatataaaatatcgggatgttacag 248  Q
    |||||||||||||||||||||| ||||||||||||    
T  36075301 taaaaatacatatataaaatattgggatgttacag 36075267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 46405479 - 46405721
Alignment:
Q  9 agcagagaattttatcagaataaatataaataatctaagaaataattatccta----tttttgtcacaccaaaatgattaataaaaacgaaatagatgaa 104  Q
    |||| |||||||||| | |||||||||||||||||||||||||||||||||||    ||||| ||| |||||| ||||||||||||| ||||||||||||    
T  46405479 agcaaagaattttattaaaataaatataaataatctaagaaataattatcctacttttttttttcataccaaattgattaataaaaatgaaatagatgaa 46405578  T
Q  105 atcatattcaattaataaaccaaagtagagaatgtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaactaattggcaagcaaagaa 204  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| |||||    
T  46405579 atcagattcaattaataaaccaaagtaaagaatgtcaagattttgtaaagtttctcgcacataaaataaattgttgaacaactaagtggcaagccaagaa 46405678  T
Q  205 aattatttataaaaatacatatataaaatatcgggatgttaca 247  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46405679 aattatttataaaaatacatatataaaatatcgggatgttaca 46405721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 58 - 247
Target Start/End: Complemental strand, 16474177 - 16473987
Alignment:
Q  58 cctatttttgtcacaccaaaatgattaataaaaac-gaaatagatgaaatcatattcaattaataaaccaaagtagagaatgtcaagattttgtaaaggt 156  Q
    ||||||||| |||||||||| |||||||||||||  |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | |    
T  16474177 cctatttttttcacaccaaattgattaataaaaaatgaaatagatgaaatcagattcaattaataaaccaaagtaaagaatgtcaagattttgtaaggtt 16474078  T
Q  157 tctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaattatttataaaaatacatatataaaatatcgggatgttaca 247  Q
    |||||||||| | |||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16474077 tctcgcacatgatataaattgttgaacaactaagtggcaagccaagaaaattatttataaaaatacatatataaaatatcgggatgttaca 16473987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 44 - 248
Target Start/End: Original strand, 5025531 - 5025741
Alignment:
Q  44 taagaaataattatcctatttttgt---cacaccaaaatgattaataaaaac---gaaatagatgaaatcatattcaattaataaaccaaagtagagaat 137  Q
    ||||||||||||||||| ||||| |   | ||||||| |||||||||||||    |||||||||||||||| |||||||||||||||||||||| |||||    
T  5025531 taagaaataattatccttttttttttctcgcaccaaagtgattaataaaaaaaatgaaatagatgaaatcagattcaattaataaaccaaagtaaagaat 5025630  T
Q  138 gtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaattatttataaaaatacatatataaaatatcg 237  Q
    ||||||||||||||| | ||||||||||||| |||| ||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||    
T  5025631 gtcaagattttgtaaggtttctcgcacataatataaattgttgaacaactaagtggcaagccaagtaaattatttataaaaatacatatataaaatatcg 5025730  T
Q  238 ggatgttacag 248  Q
    |||||||||||    
T  5025731 ggatgttacag 5025741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 58 - 248
Target Start/End: Complemental strand, 16974428 - 16974238
Alignment:
Q  58 cctatttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattcaattaataaaccaaagtagagaatgtcaagattttgtaaaggtt 157  Q
    |||||||||||||| ||||| ||||||||||||| |||||||||| ||||| |||||||| |||||||||| || |||||||||||||||||||||| ||    
T  16974428 cctatttttgtcac-ccaaattgattaataaaaatgaaatagatggaatcagattcaattgataaaccaaaataaagaatgtcaagattttgtaaagttt 16974330  T
Q  158 ctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaattattt-ataaaaatacatatataaaatatcgggatgttacag 248  Q
     ||||||||||||||| ||||||||||||||| |||||||  ||||| ||||||| | ||||||||||||||||||||| ||||||||||||    
T  16974329 atcgcacataaaataaattgttgaacaactaagtggcaagtcaagaagattatttaaaaaaaatacatatataaaatattgggatgttacag 16974238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 52642422 - 52642626
Alignment:
Q  34 ataaataatctaagaaataattatcctatttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattcaattaataaaccaaagtaga 133  Q
    |||||| || || |||||||||||| |||||||||||||||||| ||||||||||||| ||| || | ||||  | ||  ||||||||||||| | ||      
T  52642422 ataaatcatgtaggaaataattatcttatttttgtcacaccaaattgattaataaaaatgaactataagaaacaaaatcaaattaataaaccatattaag 52642521  T
Q  134 gaatgtcaagattttgt-aaaggttctcgcacataaaataagttgttgaacaactaattggcaag--caaagaaaattatttataaaaatacatatataa 230  Q
    ||||| ||||||||||| |||  ||||||||||| |||||| |||||||||||||||   |||||   ||| ||||||||||| ||||||||||||||||    
T  52642522 gaatgccaagattttgtgaaatcttctcgcacatgaaataaattgttgaacaactaaacagcaaggtaaaaaaaaattatttaaaaaaatacatatataa 52642621  T
Q  231 aatat 235  Q
    |||||    
T  52642622 aatat 52642626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 63 - 235
Target Start/End: Original strand, 15997337 - 15997509
Alignment:
Q  63 ttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattcaattaataaaccaaagtagagaatgtcaagattttgtaaaggttctcgc 162  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||||| ||||||||||||||| ||||||  ||||  |||||| |||| ||  ||||| |    
T  15997337 ttttgtcacaccaaattgattaataaaaatgaaatagatggaatcaaattcaattaataaactaaagtaaggaataccaagatgttgtgaaatttctcac 15997436  T
Q  163 acataaaataagttgttgaacaactaattggcaagcaaagaaaattattt-ataaaaatacatatataaaatat 235  Q
      ||||||||| ||| | ||||||||| || ||||  ||| |||| |||| | |||||||| ||||||||||||    
T  15997437 ttataaaataaattgcttaacaactaagtgacaagtcaag-aaataatttaaaaaaaatacgtatataaaatat 15997509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 11969201 - 11969245
Alignment:
Q  203 aaaattatttataaaaatacatatataaaatatcgggatgttaca 247  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  11969201 aaaattattttaaaaaatacatatataaaatatcgggatgttaca 11969245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 5311 - 5068
Alignment:
Q  9 agcagagaattttatcagaataaatataaataatctaagaaataattatccta----tttttgtc-acaccaaaatgattaataaaaacgaaatagatga 103  Q
    |||| |||||||||| | |||||||||||||||||||||||||||||||||||    ||||| || | |||||| ||||||||||||| |||||||||||    
T  5311 agcaaagaattttattaaaataaatataaataatctaagaaataattatcctacttttttttttctataccaaattgattaataaaaatgaaatagatga 5212  T
Q  104 aatcatattcaattaataaaccaaagtagagaatgtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaactaattggcaagcaaaga 203  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| ||||    
T  5211 aatcagattcaattaataaaccaaagtaaagaatgtcaagattttgtaaagtttctcgcacataaaataaattgttgaacaactaagtggcaagccaaga 5112  T
Q  204 aaattatttataaaaatacatatataaaatatcgggatgttaca 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5111 aaattatttataaaaatacatatataaaatatcgggatgttaca 5068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 350 - 519
Target Start/End: Original strand, 13934042 - 13934211
Alignment:
Q  350 cagattcaagaaaagtgtgtactctgctacattggacatggagataaggtagaagatcttacatgcttggcacatcatctgccatgattttggggtttca 449  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  13934042 cagattcgagaaaagtgtgtactctgctacattggacatggagataaggtagaagatcttacacgcttggcacatcatctgctatgattttggggtttca 13934141  T
Q  450 ttcatgcttctggtctttttccattgctttttacggggttcatgaatgtgagccatgccatgcttattgt 519  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13934142 ttcatgcttctggtctttttccattgctttttacggggttcctgaatgtgagccatgccatgcttattgt 13934211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 58 - 247
Target Start/End: Complemental strand, 535951 - 535761
Alignment:
Q  58 cctatttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattcaattaataaaccaaagtagagaatgtcaagattttgtaaaggtt 157  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||    
T  535951 cctatttttgtcataccaaattgattaataaaaatgaaatagatgaaatcagattcaattaataaaccaaagtaaagaatgtcaagattttgtaaagttt 535852  T
Q  158 ctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaatta-tttataaaaatacatatataaaatatcgggatgttaca 247  Q
    |||||||||||||||| ||  |||||||| || |||||||  |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  535851 ctcgcacataaaataaattaatgaacaaccaaatggcaagtcaagaaaattattttaaaaaaatacatatataaaatatcgggatgttaca 535761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 42859797 - 42859667
Alignment:
Q  59 ctatttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatatt-caattaataaaccaaagtagagaatgtcaagattttgtaaaggtt 157  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||| | |||  |  | |||||||||| ||  ||||| ||||||||||| ||| ||    
T  42859797 ctatttttgtcacaccaaattgattaataaaaataaaatagatgaaataaaattataggtgataaaccaaa-taaggaatgccaagattttgtgaagttt 42859699  T
Q  158 ctcgcacataaaataagttgttgaacaactaa 189  Q
    |||||| ||||| ||| |||||||||||||||    
T  42859698 ctcgcatataaattaaattgttgaacaactaa 42859667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 248
Target Start/End: Complemental strand, 40686400 - 40686270
Alignment:
Q  114 aattaataaaccaaagtagagaatgtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaattattta 213  Q
    ||||||||||| ||| ||  ||||| |||||| |||| ||  ||||||||||||   ||| ||||||| ||||||| ||  ||   |||||||| |||||    
T  40686400 aattaataaactaaattaaggaatgccaagatgttgtgaaatttctcgcacata---taaattgttgagcaactaagtgataatttaagaaaatcattta 40686304  T
Q  214 taaaaatacatatataaaatatcgggatgttacag 248  Q
     ||||||||||||||||||||| ||||||||||||    
T  40686303 -aaaaatacatatataaaatattgggatgttacag 40686270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 38985521 - 38985587
Alignment:
Q  25 agaataaatataaataatctaagaaataattatcctatttttgtcacaccaaaa-tgattaataaaa 90  Q
    |||||||| | ||||||| ||||| ||||||||| | ||||||||||||||||| ||||||||||||    
T  38985521 agaataaaaagaaataatgtaagatataattatcatctttttgtcacaccaaaattgattaataaaa 38985587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 2e-72; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 10752682 - 10752918
Alignment:
Q  17 attttatcagaataaatataaataatctaagaaataattatcctatttt--tgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattca 114  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||  |||||||||||| ||||||||||||| |||||||||||||| | |||||    
T  10752682 attttattagaataaatataaataatttaagaaataattatcctatttttttgtcacaccaaattgattaataaaaatgaaatagatgaaattagattca 10752781  T
Q  115 attaataaaccaaagtagagaatgtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaattatttat 214  Q
    ||||||||| ||||||| |||||||||||||||||||||| | ||| ||||||||| || ||| |||||||| || |||||||  |||||||||||||||    
T  10752782 attaataaatcaaagtaaagaatgtcaagattttgtaaagttactcacacataaaacaaattgctgaacaaccaagtggcaagtcaagaaaattatttat 10752881  T
Q  215 aaaaa--tacatatataaaatatcgggatgttacagt 249  Q
    |||||  |||||||||||||||| |||||||||||||    
T  10752882 aaaaaagtacatatataaaatattgggatgttacagt 10752918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 58 - 247
Target Start/End: Complemental strand, 25004043 - 25003853
Alignment:
Q  58 cctatttttgtcacaccaaaatgattaataaaaac-gaaatagatgaaatcatattcaattaataaaccaaagtagagaatgtcaagattttgtaaaggt 156  Q
    ||||||||| |||||||||| |||||||||||||  |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | |    
T  25004043 cctatttttttcacaccaaattgattaataaaaaatgaaatagatgaaatcagattcaattaataaaccaaagtaaagaatgtcaagattttgtaaggtt 25003944  T
Q  157 tctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaattatttataaaaatacatatataaaatatcgggatgttaca 247  Q
    |||||||||| | |||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25003943 tctcgcacatgatataaattgttgaacaactaagtggcaagccaagaaaattatttataaaaatacatatataaaatatcgggatgttaca 25003853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 58 - 247
Target Start/End: Complemental strand, 34635407 - 34635217
Alignment:
Q  58 cctatttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattcaattaataaaccaaagtagagaatgtcaagattttgtaaaggtt 157  Q
    ||||||||||||| |||||| |||| |||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||    
T  34635407 cctatttttgtcataccaaattgatcaataaaaatgaaatagatgaaatcagattcaattaataaaccaaagtaaagaatgtcaagattttgtaaagttt 34635308  T
Q  158 ctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaatta-tttataaaaatacatatataaaatatcgggatgttaca 247  Q
    |||||||||||||||| ||  |||||||| || |||||||  |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  34635307 ctcgcacataaaataaattaatgaacaaccaaatggcaagtcaagaaaattattttaaaaaaatacatatataaaatatcgggatgttaca 34635217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 437 - 515
Target Start/End: Complemental strand, 10282686 - 10282608
Alignment:
Q  437 ttttggggtttcattcatgcttctggtctttttccattgctttttacggggttcatgaatgtgagccatgccatgctta 515  Q
    |||||||||  |||||||| || ||||||||||||||||| ||||| |||||||||||||||||| ||||  |||||||    
T  10282686 ttttggggtcccattcatgattttggtctttttccattgcattttaaggggttcatgaatgtgagtcatgttatgctta 10282608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 19814811 - 19814851
Alignment:
Q  207 ttatttataaaaatacatatataaaatatcgggatgttaca 247  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19814811 ttatttataaaaatacatatataaaatatcgggatgttaca 19814851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 2e-63; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 10290297 - 10290527
Alignment:
Q  17 attttatcagaataaatataaataatctaagaaataattatcctatttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattcaat 116  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  10290297 attttattagaataaatataaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaat 10290396  T
Q  117 taataaaccaaagtagagaatgtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaattattt-ata 215  Q
    |||| ||||||||||  ||||  ||||||||||  ||| |||||||||||||||||| ||||||||||||||  || |||   |||||||| |||| | |    
T  10290397 taat-aaccaaagtaaggaataccaagattttgcgaagtttctcgcacataaaataaattgttgaacaactaggtgacaactcaagaaaatcatttaaaa 10290495  T
Q  216 aaaatacatatataaaatatcgggatgttaca 247  Q
    |||| ||||||||||||||| |||||||||||    
T  10290496 aaaaaacatatataaaatattgggatgttaca 10290527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 58 - 247
Target Start/End: Original strand, 15874975 - 15875165
Alignment:
Q  58 cctatttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattcaattaataaaccaaagtagagaatgtcaagattttgtaaaggtt 157  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||    
T  15874975 cctatttttgtcataccaaattgattaataaaaatgaaatagatgaaatcagattcaattaataaaccaaagtaaagaatgtcaagattttgtaaagttt 15875074  T
Q  158 ctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaatta-tttataaaaatacatatataaaatatcgggatgttaca 247  Q
    |||||||||||||||| ||  |||||||  || |||||||  |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  15875075 ctcgcacataaaataaattaatgaacaatcaaatggcaagtcaagaaaattattttaaaaaaatacatatataaaatatcgggatgttaca 15875165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 35 - 247
Target Start/End: Original strand, 48655490 - 48655696
Alignment:
Q  35 taaataatctaagaaataattatcctatttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattcaattaataaaccaaagtagag 134  Q
    ||||| || |||| ||| ||||||||||||||| |||||  || ||||||||||||| | | || ||||||  | ||  ||||||||||||||||||  |    
T  48655490 taaatcatgtaaggaattattatcctatttttggcacacataattgattaataaaaatgcactatatgaaagaaaatctaattaataaaccaaagtaagg 48655589  T
Q  135 aatgtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaattatttataaaaatacatatataaaata 234  Q
    |||  ||||||||    ||  |||||||||||||||||| ||||||||||||||| |  ||||  |||||||| ||||   || ||||||||||||| ||    
T  48655590 aataccaagatttg---aaatttctcgcacataaaataaattgttgaacaactaagttacaagtcaagaaaatcattt---aagatacatatataaatta 48655683  T
Q  235 tcgggatgttaca 247  Q
    | |||||||||||    
T  48655684 ttgggatgttaca 48655696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 247
Target Start/End: Complemental strand, 9741727 - 9741511
Alignment:
Q  26 gaataaatataaataatctaagaaataattatcctatttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattcaattaataaacc 125  Q
    ||||||| |||||| || |||| ||| ||||| ||||||||||||||||||| ||||||||||||| ||| || || |||  | |   ||||||||||||    
T  9741727 gaataaaaataaattatgtaaggaatgattattctatttttgtcacaccaaactgattaataaaaatgaactatataaaagaaaacctaattaataaacc 9741628  T
Q  126 aaagtagagaatgtcaagattttgtaaaggttctcgcacataaa-ataagttgttgaacaactaattggcaagcaaagaaaattatttataaaaatacat 224  Q
    ||||  |||||     ||   |||| ||  |||||||||||||| ||||  |||||||||||||| || ||||  || ||||| |||||  |||||||||    
T  9741627 aaagg-gagaaat---aggaattgtgaaatttctcgcacataaatataaactgttgaacaactaagtgacaagtcaaaaaaatcattta--aaaatacat 9741534  T
Q  225 atataaaatatcgggatgttaca 247  Q
    ||||||||||| |||||||||||    
T  9741533 atataaaatattgggatgttaca 9741511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 12197420 - 12197492
Alignment:
Q  119 ataaaccaaagtagagaatgtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaactaatt 191  Q
    |||||| ||||||  ||||| ||||||||||| ||| |||||||| ||||||||| |||||||||||||||||    
T  12197420 ataaactaaagtaaggaatgccaagattttgtgaagtttctcgcatataaaataaattgttgaacaactaatt 12197492  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 1818761 - 1818808
Alignment:
Q  44 taagaaataattatcctatttttgtcacaccaaaatgattaataaaaa 91  Q
    ||||| ||||||||| |||||||||||||||||| |||||||||||||    
T  1818761 taagatataattatcatatttttgtcacaccaaattgattaataaaaa 1818808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 7849 - 7678
Alignment:
Q  17 attttatcagaataaatataaataatctaagaaataattatcctatttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattcaat 116  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  7849 attttattagaataaatataaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaat 7750  T
Q  117 taataaaccaaagtagagaatgtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaacta 188  Q
    |||||||| |||||| |||||  ||||||||||  ||| |||||||||||||||||| ||||||||||||||    
T  7749 taataaactaaagtaaagaataccaagattttgcgaagtttctcgcacataaaataaattgttgaacaacta 7678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 9e-59; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 58 - 247
Target Start/End: Complemental strand, 40457841 - 40457650
Alignment:
Q  58 cctatttttgtcacaccaaaatgattaataaaaac-gaaatagatgaaatcatattcaattaataaaccaaagtagagaatgtcaagattttgtaaaggt 156  Q
    ||||||||| ||| |||||| |||||||||||||  |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | |    
T  40457841 cctatttttttcaaaccaaattgattaataaaaaatgaaatagatgaaatcagattcaattaataaaccaaagtaaagaatgtcaagattttgtaaggtt 40457742  T
Q  157 tctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaattatttata-aaaatacatatataaaatatcgggatgttaca 247  Q
    |||||||||||| |||  |||||||| || ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40457741 tctcgcacataatatagattgttgaataattaagtggcaagccaagaaaattatttataaaaaatacatatataaaatatcgggatgttaca 40457650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 34 - 247
Target Start/End: Complemental strand, 49497101 - 49496891
Alignment:
Q  34 ataaataatctaagaaataattatcctatttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattcaattaataaaccaaagtaga 133  Q
    |||||| || |||| ||| ||||||||||||||||||||||||| |||||| |||||| ||| || ||||||  | |   ||||||||| | ||||||      
T  49497101 ataaatcatttaaggaatgattatcctatttttgtcacaccaaattgattattaaaaatgaactatatgaaagaaaacctaattaataaccaaaagtaag 49497002  T
Q  134 gaatgtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaattatttataaaaatacatatataaaat 233  Q
    ||||| ||||||||||||||  |||||||||||||||||| ||||||| ||||||| || ||||  |||||||| ||   || || ||||||||||||||    
T  49497001 gaatgccaagattttgtaaaatttctcgcacataaaataaattgttgaccaactaaatgacaagtcaagaaaatcat---tagaattacatatataaaat 49496905  T
Q  234 atcgggatgttaca 247  Q
    ||||||||||||||    
T  49496904 atcgggatgttaca 49496891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 63 - 235
Target Start/End: Original strand, 41947301 - 41947476
Alignment:
Q  63 ttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattcaattaataaaccaaagtagagaatgtcaagattttgtaaaggttctcgc 162  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||||| |||||||||||||| |||||||  | ||| |||||| |||| ||| ||||| |    
T  41947301 ttttgtcacaccaaattgattaataaaaatgaaatagatggaatcaaattcaattaataaatcaaagtaaggtatgccaagatgttgtgaagtttctcac 41947400  T
Q  163 acataaaataagttgttgaacaactaattggcaagcaaagaaaattattt---ataaaaatacatatataaaatat 235  Q
      ||||||||| ||||||||||||||| || ||||  |||||||| ||||   | |||||||| ||||||||||||    
T  41947401 ttataaaataaattgttgaacaactaagtgacaagtcaagaaaataattttaaaaaaaaatacgtatataaaatat 41947476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 63 - 186
Target Start/End: Original strand, 10345631 - 10345754
Alignment:
Q  63 ttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattcaattaataaaccaaagtagagaatgtcaagattttgtaaaggttctcgc 162  Q
    ||||||| ||||||| ||||||||||||| |||||||||| ||||| ||||||||||||||||||| ||  ||||| |||||| |||| ||| |||||||    
T  10345631 ttttgtcgcaccaaattgattaataaaaatgaaatagatggaatcaaattcaattaataaaccaaaataaggaatgccaagatgttgtgaagtttctcgc 10345730  T
Q  163 acataaaataagttgttgaacaac 186  Q
      | ||||||| ||||||||||||    
T  10345731 ttagaaaataaattgttgaacaac 10345754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 8362755 - 8362652
Alignment:
Q  143 gattttgtaaaggttctcgcacataaa-ataagttgttgaacaactaattggcaagcaaagaaaattatttataaaaatacatatataaaatatcgggat 241  Q
    |||||||| ||  |||||||||||||| ||||  |||||||||||||| || ||||  |||||||| |||||  |||||||||||||||||||| |||||    
T  8362755 gattttgtgaaatttctcgcacataaatataaactgttgaacaactaagtgacaagtcaagaaaatcattta--aaaatacatatataaaatattgggat 8362658  T
Q  242 gttaca 247  Q
    ||||||    
T  8362657 gttaca 8362652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 21232858 - 21233095
Alignment:
Q  9 agcagagaattttatcagaataaa-tataaataatctaagaaataattatcctatttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatc 107  Q
    |||| |||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||| || ||||||      
T  21232858 agcaaagaattttattagaataaaatataaataatctaagaaataattatcctacttttgccacaccaaattgattaataaaaatgaactatatgaaaga 21232957  T
Q  108 atattcaattaataaaccaaagtagagaatgtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaat 207  Q
    | |   ||||||| ||||||||||  ||||   ||||||||| |||| |||||||| ||||||||| |||||||||||  |  || |||   ||||||||    
T  21232958 aaacctaattaatgaaccaaagtaaggaatactaagattttggaaagtttctcgcatataaaataaattgttgaacaatcaggtgacaactcaagaaaat 21233057  T
Q  208 tatttataaaaatacatatataaaatatcgggatgttaca 247  Q
     |||  |||||||||||||||||||||| |||||||||||    
T  21233058 catt--taaaaatacatatataaaatattgggatgttaca 21233095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 63 - 219
Target Start/End: Original strand, 42078429 - 42078585
Alignment:
Q  63 ttttgtcacaccaaaatgattaataaaaacgaaatagatgaaatcatattcaattaataaaccaaagtagagaatgtcaagattttgtaaaggttctcgc 162  Q
    |||||||| |||||| ||||||||||||| |||||||||| ||||| ||||||||||||||||||||||  ||||| |||||| |||| ||| |||||||    
T  42078429 ttttgtcataccaaattgattaataaaaatgaaatagatggaatcaaattcaattaataaaccaaagtaaggaatgccaagatgttgtgaagtttctcgc 42078528  T
Q  163 acataaaataagttgttgaacaactaattggcaagcaaagaaaattatttataaaaa 219  Q
      ||||||||| ||||||||||||||| || ||||  |||||||| ||||| |||||    
T  42078529 ttataaaataaattgttgaacaactaagtgacaagttaagaaaataatttaaaaaaa 42078585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 41162353 - 41162274
Alignment:
Q  94 aaatagatgaaatcatattcaattaataaaccaaagtagagaatgtcaagattttgtaaaggttctcgcacataaaataa 173  Q
    ||||||||||||||| ||||||||||||||||||||||  |||||  ||||| |||  ||| |||||||  |||||||||    
T  41162353 aaatagatgaaatcaaattcaattaataaaccaaagtaaggaatgctaagatgttgcgaagtttctcgcttataaaataa 41162274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 121 - 247
Target Start/End: Original strand, 5429 - 5556
Alignment:
Q  121 aaaccaaagtagagaatgtcaagattttgtaaaggttctcgcacataaaataagttgttgaacaactaattggcaagcaaagaaaatta-tttataaaaa 219  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||  |||||||| || |||||||  |||||||||| ||||  ||||    
T  5429 aaaccaaagtaaagaatgtcaagattttgtaaagtttctcgcacataaaataaattaatgaacaaccaaatggcaagtcaagaaaattattttaataaaa 5528  T
Q  220 tacatatataaaatatcgggatgttaca 247  Q
    ||||||||||||||||||||||||||||    
T  5529 tacatatataaaatatcgggatgttaca 5556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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