View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_82 (Length: 225)
Name: NF9778_low_82
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_82 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold1086 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 30568646 - 30568870
Alignment:
| Q |
1 |
ggataccttatatatcaaattattcttcgtgaaatatcgaattccaatcaaatcaacgaagtaccaaatttcaatcgaattgaatcgcatgtccttggac |
100 |
Q |
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| T |
30568646 |
ggataccttatatatcaaattattcttcgtgaaatatcgaattccaatcaaatcaacgaagtaccaaatttcaatcgaattgaatcgcatgtccttggac |
30568745 |
T |
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| Q |
101 |
gggatttgtttgattgtcatggggctagagctactacatctggaggtcgaaatcaacctccttatatgttgcagaaggtgattctatatgtttgttacct |
200 |
Q |
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| T |
30568746 |
gggatttgtttgattgtcatggggctagagctactacatctggaggtcgaaatcaacctccttatatgttgcagaaggtgattctatatgtttgttacct |
30568845 |
T |
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| Q |
201 |
ttattgctaccataatttatccaat |
225 |
Q |
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| T |
30568846 |
ttattgctaccataatttatccaat |
30568870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30572165 - 30572394
Alignment:
| Q |
1 |
ggataccttatatatcaaattattcttcgtgaaatatcgaattccaatcaaatcaacgaagtaccaaat---------ttcaatcgaattgaatcgcatg |
91 |
Q |
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| T |
30572165 |
ggataccttatatatcaaattattctttgtgaaatatcgaattccaatcaaatcaacgaagtaccaaatatatcgaattttaatcgaattgaatcgcatg |
30572264 |
T |
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| Q |
92 |
tccttggacgggatttgtttgattgtcatggggctagagctactacatctggaggtcgaaatcaacctccttatatgttgcagaaggtgattctatatgt |
191 |
Q |
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| T |
30572265 |
tccttggacgggatttgtttgattgtcatggagctagagctactacatctggaggtcgaaatcaacctccttatatgctgcagaaggtgattctatatgt |
30572364 |
T |
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| Q |
192 |
ttgttacctttattgctaccataatttatc |
221 |
Q |
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| T |
30572365 |
ttgttacctttattgctaccataatttatc |
30572394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 30545832 - 30545886
Alignment:
| Q |
15 |
tcaaattattcttcgtgaaatatcgaattccaatcaaatcaacgaagtaccaaat |
69 |
Q |
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| T |
30545832 |
tcaaattattctccatgaaatatcgaattttaatcaaatcgacgaagtaccaaat |
30545886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1086 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1086
Description:
Target: scaffold1086; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 1078 - 1132
Alignment:
| Q |
15 |
tcaaattattcttcgtgaaatatcgaattccaatcaaatcaacgaagtaccaaat |
69 |
Q |
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| T |
1078 |
tcaaattattctccatgaaatatcgaattttaatcaaatcgacgaagtaccaaat |
1132 |
T |
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