View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_83 (Length: 225)
Name: NF9778_low_83
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_83 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 44530093 - 44530291
Alignment:
| Q |
8 |
gcatgaacacctcatagccggcggcggcataaatctgaaaaaataaaccaaaacgccgtggtggtggagtagaagggttttcgattcgatggtggttaca |
107 |
Q |
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| T |
44530093 |
gcatgaacacctcatagccggcggcggcataaatctgaaaatataaaccaaaacgccgtggtggtggagtagaagggttttcgattcgatggtggttaca |
44530192 |
T |
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| Q |
108 |
actgtacggcggagacggtggtcatagagcggcggccgtcgacgtggaacaaatctgttatgatagagagaagaggaggatgaaagggagtgttgtttt |
206 |
Q |
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| T |
44530193 |
actgtacggtggagacggtggtcatagaacggcagccgtcgatgaggaacaaatatgttatgatagagagaagaggatgatgaaagggagtgttgtttt |
44530291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 46035619 - 46035814
Alignment:
| Q |
8 |
gcatgaacacctcatagccggcggcggcataaatctgaaaaaataaaccaaaacgccgtggtggtggagtagaagggttttcgattcgatggtggttaca |
107 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
46035619 |
gcatgaacacctcatagccggcgacggcataaatctgaaaaaataaaccaaaacgccttggt---ggagtagaagggttttcgattcgatggtggttaca |
46035715 |
T |
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| Q |
108 |
actgtacggcggagacggtggtcatagagcggcggccgtcgacgtggaacaaatctgttatgatagagagaagaggaggatgaaagggagtgttgtttt |
206 |
Q |
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|||||||| || |||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46035716 |
actgtacgccgaagacggtggtcatagaacggcggtcgtcgacgaggaacaaatctgttatgatagagagaagaggaggatgaaagggagtgttgtttt |
46035814 |
T |
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