View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_89 (Length: 217)
Name: NF9778_low_89
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_89 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 46921923 - 46921749
Alignment:
| Q |
20 |
taggattcaggcatgagagatctaagaacagagagatactcattcatttgctttctcctgttgcgttctacagcaatgtgagtcattctctgattctcaa |
119 |
Q |
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| T |
46921923 |
taggattcaggcatgagagatctaagaacagagagatactcattcatttgctttctcctgttgcgttctacagcaatgtgagtcattctctgattctcaa |
46921824 |
T |
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| Q |
120 |
tttcttccttattcttacttgttttgactctgcgtttcttggaacgagaacgagaacgagttgaaattgaactatctaaag |
200 |
Q |
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| T |
46921823 |
tttcttccttattcttacttgttttgactctgcgtttcttggaacgagaa------cgagttgaaattgaactatctaaag |
46921749 |
T |
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Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 36676411 - 36676508
Alignment:
| Q |
29 |
ggcatgagagatctaagaacagagagatactcattcatttgctttctcctgttgcgttctacagcaatgtgagtcattctctgattctcaatttcttc |
126 |
Q |
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| T |
36676411 |
ggcattagagagcgaagaatagaaagatactcattcatctgctttcttctattacgctcaacagcaatgtgagtcattctctgattctcaatttcttc |
36676508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 8873295 - 8873402
Alignment:
| Q |
29 |
ggcatgagagatctaagaacagagagatactcattcatttgctttctcctgttgcgttctacagcaatgtgagtcattctctgattctcaatttcttcct |
128 |
Q |
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||||||||||| ||||||||| ||||| ||||||||||| |||||| || ||||| ||||||||||| |||||||| |||||||||| ||||||| |
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| T |
8873295 |
ggcatgagagacctaagaacactgagatgatcattcatttggcgtctcctattacgttcaacagcaatgtgtgtcattctttgattctcaacatcttcct |
8873394 |
T |
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| Q |
129 |
tattctta |
136 |
Q |
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|||||||| |
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| T |
8873395 |
tattctta |
8873402 |
T |
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