View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_9 (Length: 533)
Name: NF9778_low_9
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 193 - 516
Target Start/End: Complemental strand, 20614160 - 20613839
Alignment:
| Q |
193 |
cagcttccacatgtgcaggataattattctagtataggtgtagcataacaatatccttgtaacaaacttataaagttagttttagttatataccttacag |
292 |
Q |
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| T |
20614160 |
cagcttccacatgtgcaggataattattc-agtataggtgtagcataacactatccttgtaacaaacttataaagttagttttagttatatagcttacag |
20614062 |
T |
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| Q |
293 |
attaaagtctcaattcaatgtaatattcaacaatcagagaataaaaaataagctttaaagcattgtgaataatctcttacactctctctgttatggaata |
392 |
Q |
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| T |
20614061 |
attaaaaactcaattcaatgtaatattcaacgatcagaaaataaaaaacaagctttaaagc-ttgtgaataatctcttacactctctctgttatggaaca |
20613963 |
T |
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| Q |
393 |
taaatctcaatcccaattctaccctagttcaataacatgtatatgaaatcccatagattcctcgattatgatcttctctagtgcaaaccgctactccagt |
492 |
Q |
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| T |
20613962 |
taaatctcaatcccaattctaccctagttcaataacgtgtatatgaaatcccatagattcctcgattatgatcttctctagtgcaaactgctactccaat |
20613863 |
T |
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| Q |
493 |
agttgcaacaaccgctcctctgcc |
516 |
Q |
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| T |
20613862 |
agttgcaacaaccgcgcctctgcc |
20613839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 20614399 - 20614214
Alignment:
| Q |
1 |
tcaacattaaacattacattgtactatatcttgagttcgctgccatgaaataggaagcacgttgttgcttccccataacacttgcagccgaattgatgga |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20614399 |
tcaacattaa-cattacattgtactatatcttgagttcgctgccatgaaataggaagcatgttgttgcttccccataacacttgcagccgaattgatgga |
20614301 |
T |
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| Q |
101 |
atccgcggttgcattatgtacaaccattctacggtgggatgcttcaacagaagaagccatgtaatcctctatgagatgtcaagctct |
187 |
Q |
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| T |
20614300 |
attcacggttgcattatgtacaaccattctactgcggtatgcttcaacagaagaagccatgtaatcctctatgagatgttaagctct |
20614214 |
T |
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