View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_93 (Length: 201)
Name: NF9778_low_93
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_93 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 41517117 - 41516921
Alignment:
| Q |
1 |
aacaaaagataaaataaagtcaactgttttcaattcatat-------taactgttttgataagctatcccagagagcttagatagaaaagcttaaaacaa |
93 |
Q |
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| T |
41517117 |
aacaaaagataaaataaagtcaactgttttcaattcatataagcaattaactgttttgataagctatcccagagagcttggatagaaaagcttaaaacaa |
41517018 |
T |
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| Q |
94 |
ctaatagatatgtcataagctgtttctcgcaaacatttatgtgagtaggtaagctcaaataagtaaatcaaaagggacctaaaccaaaggagggaac |
190 |
Q |
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| T |
41517017 |
cttatagatatgtcataagctgtttgtcgcaaacatttatgtgagtaggtaagctcaaataagtcaatcaaaagggacctaaaccaaaggagggaac |
41516921 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 54180844 - 54180768
Alignment:
| Q |
44 |
ctgttttgataagctatcccagagagcttagatagaaaagcttaaaacaactaatagatatgtcataagctgtttct |
120 |
Q |
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||||||| ||||||||| ||||||||| ||| | ||||| ||||||||| || || |||||||||||||||||| |
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| T |
54180844 |
ctgttttcataagctattatggagagcttatataaataagctaaaaacaacttatggacatgtcataagctgtttct |
54180768 |
T |
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