View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_high_12 (Length: 431)
Name: NF9779_high_12
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 426
Target Start/End: Complemental strand, 20913136 - 20912727
Alignment:
| Q |
17 |
cagttgcaatctgagctttgccactaggaaacaaataatttctgaaaaatccagccttcacatcaagaagttctcctttctttccaacattaacaagatc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||| |
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| T |
20913136 |
cagttgcaatctgagctttgccactaggaaacaaataatttctgaaaaatccagccttcacatcaagaagctctcctttctttccaacattaagaatatc |
20913037 |
T |
|
| Q |
117 |
ttccttcaatataatctaatttcacacaataacaatnnnnnnn-ctcaatacaaataacaaatactgtcacaactgagacatnnnnnnnnnnnnnnntgt |
215 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || ||| |
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| T |
20913036 |
ttccttcaatataatctaatttcacaaaataacaataaaaaaaactcaatacaaataacaaatactgtcacaactgagagataaaaaaaaaaa----tgt |
20912941 |
T |
|
| Q |
216 |
tggagtaactaacctttcgggttttctttgctttcttctgagcgaaaattaagaaccttgaagttttgttggaaaattgagaag---tgttcaagttaga |
312 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20912940 |
tggtgtaactaacctttcgggttttctttgctttcttctgagcgaaaattaagaaccttgaagttttgttggaaaattgagaagaagtgttcaagttaga |
20912841 |
T |
|
| Q |
313 |
ggtgaaactatgttgcaatggaagtgaagataatgttgatgatgatgccattgttgttttgttaactcaccgctcaatttgtgttctgtgttttggtctc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20912840 |
ggtgaaactatgttgcaatggaagtgaagataatgttgatgatgatgccattgttgttttgttaactcaccgctcaatttgtgttctgtgttttggtctc |
20912741 |
T |
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| Q |
413 |
ttatctctgcttct |
426 |
Q |
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|||||||| ||||| |
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| T |
20912740 |
ttatctcttcttct |
20912727 |
T |
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