View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_high_23 (Length: 336)
Name: NF9779_high_23
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 41677008 - 41676778
Alignment:
| Q |
13 |
aagggtttgactaaaggtggccgacttattgtatgaaatatcttcttgacaaagtgattatcaaacagtgtgtttcgttgatgtgtgactatatgacgat |
112 |
Q |
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| T |
41677008 |
aagggtttgactaaaggtggccgacttattgtatgaaatatcttcttgacaaagtgattatcaaacagtgtgtttcgttgatgtgtgagtatatgacgat |
41676909 |
T |
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| Q |
113 |
gcaagtgtctgtggatgaaaaagcttccaatagtaagagagcattctgtgtgggtgtgcatagaactcaacttgagggaaagata-ttggtatctctggt |
211 |
Q |
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| T |
41676908 |
gcaagtgtatgtggatgaaaaagcttccaataataagagagcatcct------gtgtgcatagaactcaacttgagggaaagatagttggtgtctctggt |
41676815 |
T |
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| Q |
212 |
taaaggagtaaaacatttaatgaaaatgtgagagaat |
248 |
Q |
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| T |
41676814 |
taaaggagtaaaagatttaatgaaaatgtgagagaat |
41676778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 41676777 - 41676725
Alignment:
| Q |
284 |
tatgatgtccaaagcatttcggtgattgtttttagcttaatgtgatgaacctc |
336 |
Q |
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| T |
41676777 |
tatgatgtccaaagcacgtcagtgattgtttttagctcaatgtgatgaacctc |
41676725 |
T |
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