View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_high_24 (Length: 330)
Name: NF9779_high_24
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 4857989 - 4857693
Alignment:
| Q |
19 |
acaagtttgttctaggtgccctattctcttgcaaatctaacaaataattgaacatagttgttaaaatcattcaattatagccgcacggaccagcttcttg |
118 |
Q |
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| T |
4857989 |
acaagtttgttctaggtgccctattctcttgcaaatctaacaaataattgaacatagttgttaaaatcgttcaattatagccgctcggaccagcttcttg |
4857890 |
T |
|
| Q |
119 |
gaacaaatgtataaacgattttgtcatggaaccgcttaaactgttaagagctgatctggtttttgctcaggacatgattatttctttgttaaaatctttg |
218 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4857889 |
gaacaaatgtataaacgattttctcatggaaccgcataaactgttaagagctgatctggttttcgctcaggacatgattatttctttgttaaaatctttg |
4857790 |
T |
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| Q |
219 |
taaaatgctactttaatagaatacaagtaatagcttacaaccctcattcttaatacatcaaattttgtaagtaagtaattcattttgagaccctatg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4857789 |
taaaatgctactttaatagaatacaagtaatagcttacaaccctcattcttaatacatcaaattttgtaagtaagtaattcattttgagaccctatg |
4857693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 5176795 - 5176867
Alignment:
| Q |
19 |
acaagtttgttctaggtgccctattctcttgcaaatctaacaaataattgaacatagttgttaaaatcattca |
91 |
Q |
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||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||||||||| |||| |
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| T |
5176795 |
acaagtttgttctaggtgcactattctcttgaaaatcaaacaaataattgagcatagttgttaaaatcgttca |
5176867 |
T |
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