View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_high_28 (Length: 311)
Name: NF9779_high_28
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_high_28 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 4121500 - 4121189
Alignment:
| Q |
1 |
attgatgatctcaaaaccgaatgcttggagcatgaagcaaccagagtttggcctagaaggattaggagaatcatagagtattttattcaagagaaatgtt |
100 |
Q |
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| T |
4121500 |
attgataatctcaaaaccgaatgtttggagcatgaagcaaccagagtttggcctagaaggattaggagaatcatagagtattatattcaagagaaatgtt |
4121401 |
T |
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| Q |
101 |
tataatacattttcttgacattctttttagtacactattattaggtgaaatttgtggcttacaatacttcaggaatagccatgatcaatttttggaaact |
200 |
Q |
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| T |
4121400 |
tataatacattttcttgacattctttttagtacactattattaggtgaaatttgtggcttacaatacttcaggaatagccatgatcaatttttggaaact |
4121301 |
T |
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| Q |
201 |
attccgtcnnnnnnnnnnnncttttatttgtaaatgacaacaatatgggtgtagagacacccaaagtttatatcaagtgttgtgattagg-aaacatatt |
299 |
Q |
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| T |
4121300 |
attccgtcaaaaacaaaaaacttttatttgtaaatgacaacaatatgggtgtagagacacccaaagtttatatcaagtgttgtgattaggaaaacatatt |
4121201 |
T |
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| Q |
300 |
tcagtttacttt |
311 |
Q |
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|||||||||||| |
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| T |
4121200 |
tcagtttacttt |
4121189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 4136218 - 4136174
Alignment:
| Q |
8 |
atctcaaaaccgaatgcttggagcatgaagcaaccagagtttggc |
52 |
Q |
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| T |
4136218 |
atctcacaactgaatgcttggagcatgaagcaagcacagtttggc |
4136174 |
T |
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