View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9779_high_33 (Length: 281)

Name: NF9779_high_33
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9779_high_33
NF9779_high_33
[»] chr8 (4 HSPs)
chr8 (18-273)||(14259419-14259674)
chr8 (92-170)||(4950528-4950607)
chr8 (94-151)||(37641597-37641654)
chr8 (94-173)||(18123273-18123353)
[»] chr1 (1 HSPs)
chr1 (89-173)||(18325347-18325432)
[»] chr5 (3 HSPs)
chr5 (106-170)||(10372957-10373022)
chr5 (116-169)||(7637344-7637398)
chr5 (106-170)||(35138984-35139049)
[»] chr4 (4 HSPs)
chr4 (94-169)||(34719115-34719191)
chr4 (94-180)||(22683911-22683998)
chr4 (110-173)||(17898086-17898150)
chr4 (106-180)||(25319107-25319182)
[»] chr6 (1 HSPs)
chr6 (103-170)||(32888918-32888986)
[»] chr2 (8 HSPs)
chr2 (106-173)||(44439313-44439381)
chr2 (107-173)||(14205510-14205577)
chr2 (128-170)||(14443237-14443280)
chr2 (107-173)||(15220819-15220886)
chr2 (106-173)||(7629928-7629997)
chr2 (94-170)||(32307131-32307208)
chr2 (92-152)||(29229757-29229816)
chr2 (92-152)||(29343057-29343116)
[»] chr3 (1 HSPs)
chr3 (110-183)||(48089638-48089711)
[»] chr7 (1 HSPs)
chr7 (92-179)||(44570692-44570780)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 14259674 - 14259419
Alignment:
Q  18 cttactacatttctttttccgatgctatttatactagcgttagtgtatgtttgattttgcactgatggattatgtaatttttacgtttaaatttattgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  14259674 cttactacatttctttttccgatgctatttatactagcgttagtgtatgtttgattttgcggtgatggattatgtaatttttacgtttaaatttattgtt 14259575  T
Q  118 catctcactttcatgtaaatatatccaaacataaacattttacattcaactcacttgtaagtagaaatccttttgaaacatgaaattgaagataatcctt 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14259574 catctcactttcatgtaaatatattcaaacataaacattttacattcaactcacttgtaagtagaaatccttttgaaacatgaaattgaagataatcctt 14259475  T
Q  218 ctgaacctctagctgccacaaacaaaaatcaaacatggaacaatcttgcctatgct 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14259474 ctgaacctctagctgccacaaacaaaaatcaaacatggaacaatcttgccaatgct 14259419  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 4950528 - 4950607
Alignment:
Q  92 taatttttacgtttaaatttattgttcatctcactttcatgtaaatatatccaaacataaa-cattttacattcaactca 170  Q
    ||||||||||  ||||||||||| |||| |||||||||   |||||||||||||||||||| || ||||| |||||||||    
T  4950528 taatttttacacttaaatttatttttcaactcactttctcataaatatatccaaacataaatcactttaccttcaactca 4950607  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 37641597 - 37641654
Alignment:
Q  94 atttttacgtttaaatttattgttcatctcactttcatgtaaatatatccaaacataa 151  Q
    |||||||  ||| ||||||||||||| |||||||| | |||||| |||||||||||||    
T  37641597 atttttagctttcaatttattgttcaactcacttttaggtaaatttatccaaacataa 37641654  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 18123273 - 18123353
Alignment:
Q  94 atttttacgtttaaatttattgttcatctcactttcatgtaaatatatccaaacataaa-cattttacattcaactcactt 173  Q
    ||||||||||||||| |||| ||||| |||||||| |  ||||||||| | |||| ||| |||||||| ||||| ||||||    
T  18123273 atttttacgtttaaagttatagttcaactcacttttacataaatatattccaacacaaatcattttaccttcaattcactt 18123353  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 18325432 - 18325347
Alignment:
Q  89 atgtaatttttacgtttaaatttattgttcatctcactttcatgtaaatatatccaaacataaa-cattttacattcaactcactt 173  Q
    |||| |||||||| || ||||||| |||||||||||||||||  ||||| |||| ||||| ||| |||||||||||||||||||||    
T  18325432 atgtgatttttacattaaaatttactgttcatctcactttcacataaatttatctaaacagaaaccattttacattcaactcactt 18325347  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 10372957 - 10373022
Alignment:
Q  106 aaatttattgttcatctcactttcatgtaaatatatccaaacataaa-cattttacattcaactca 170  Q
    |||||||||||||| || |||||| ||||||| |||||||||||||| || |||||||||||||||    
T  10372957 aaatttattgttcaacttactttcgtgtaaatgtatccaaacataaaccagtttacattcaactca 10373022  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 7637398 - 7637344
Alignment:
Q  116 ttcatctcactttcatgtaaatatatccaaacataaa-cattttacattcaactc 169  Q
    |||||||||||||||  |||||||||||||||||||| || |||||||| |||||    
T  7637398 ttcatctcactttcacctaaatatatccaaacataaaccactttacatttaactc 7637344  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 35139049 - 35138984
Alignment:
Q  106 aaatttattgttcatctcactttcatgtaaatatatccaaacataaa-cattttacattcaactca 170  Q
    |||||||||||||| ||||||||||| | ||| ||||  |||||||| |||||||| |||||||||    
T  35139049 aaatttattgttcaactcactttcatatgaatgtatctgaacataaatcattttaccttcaactca 35138984  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 34719115 - 34719191
Alignment:
Q  94 atttttacgtttaaatttattgttcatctcactttcatgtaaatatatccaaacataaac-attttacattcaactc 169  Q
    |||||||| || ||||||||| |||| ||| |||||||| |||| ||||||||||||||| |||||||||| |||||    
T  34719115 atttttacattgaaatttatttttcaactcgctttcatgcaaatgtatccaaacataaacaattttacatttaactc 34719191  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 22683911 - 22683998
Alignment:
Q  94 atttttacgtttaaatttattgttcatctcactttcatgtaaatatatccaaacataaa-cattttacattcaactcacttgtaagta 180  Q
    |||||||| || |||||||||||||| ||| |||| |  ||||| | |||||||||||| |||||||| |||||||||||| ||||||    
T  22683911 atttttacattgaaatttattgttcaactcgcttttacataaatgtgtccaaacataaaccattttactttcaactcacttttaagta 22683998  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 17898150 - 17898086
Alignment:
Q  110 ttattgttcatctcactttcatgtaaatatatccaaacataaa-cattttacattcaactcactt 173  Q
    ||||||||||  ||||||| |  |||||||||||||||||||| || ||||||||||||||||||    
T  17898150 ttattgttcaattcacttttacctaaatatatccaaacataaatcactttacattcaactcactt 17898086  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 25319107 - 25319182
Alignment:
Q  106 aaatttattgttcatctcactttcatgtaaatatatccaaacat-aaacattttacattcaactcacttgtaagta 180  Q
    |||||||||||||| |||||||| | |||||| |||| |||||| ||| | ||||||||||||| |||| ||||||    
T  25319107 aaatttattgttcaactcacttttacgtaaatgtatcgaaacataaaaaactttacattcaacttacttttaagta 25319182  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 32888986 - 32888918
Alignment:
Q  103 tttaaatttattgttcatctcactttcatgtaaatatatccaaacataaa-cattttacattcaactca 170  Q
    ||||||||||||||||| |||||||| |  ||||||||| |||||||||| |||||||  |||||||||    
T  32888986 tttaaatttattgttcaactcacttttacataaatatattcaaacataaatcattttatcttcaactca 32888918  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 44439313 - 44439381
Alignment:
Q  106 aaatttattgttcatctcactttcatgtaaatatatccaaacataaa-cattttacattcaactcactt 173  Q
    |||||||||||||| |||||||| |  |||| ||||||||||||||| || |||||||| |||||||||    
T  44439313 aaatttattgttcaactcacttttacataaacatatccaaacataaatcactttacatttaactcactt 44439381  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 14205510 - 14205577
Alignment:
Q  107 aatttattgttcatctcactttcatgtaaatatatccaaacat-aaacattttacattcaactcactt 173  Q
    |||||||||||||  ||||||| || ||||||||| ||||||| ||| ||||||||||||||| ||||    
T  14205510 aatttattgttcaattcactttaatctaaatatattcaaacataaaatattttacattcaactaactt 14205577  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 14443280 - 14443237
Alignment:
Q  128 tcatgtaaatatatccaaacataaa-cattttacattcaactca 170  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||    
T  14443280 tcatgtaaatatatccaaacataaaccatttcacattcaactca 14443237  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 15220886 - 15220819
Alignment:
Q  107 aatttattgttcatctcactttcatgtaaatatatccaaacataaa-cattttacattcaactcactt 173  Q
    ||||||||||||| |||||||| |  | ||| |||||||||||||| || ||||||||||||||||||    
T  15220886 aatttattgttcaactcactttaacatgaatgtatccaaacataaatcactttacattcaactcactt 15220819  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 7629928 - 7629997
Alignment:
Q  106 aaatttattgttcatctcactttcatgtaaatatatccaaacataaa--cattttacattcaactcactt 173  Q
    ||||| ||||||||  ||||||| | | |||||||||||||||||||  || ||||||||||||||||||    
T  7629928 aaattcattgttcaattcacttttacgaaaatatatccaaacataaaatcactttacattcaactcactt 7629997  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 32307131 - 32307208
Alignment:
Q  94 atttttacgtttaaatttattgttcatctcactttcatgtaaatatatccaaacataa-acattttacattcaactca 170  Q
    ||||||||  ||| |||||||||||| |||||||| |||| ||| |||||||| ||||  |||||||||||| |||||    
T  32307131 atttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactca 32307208  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 29229816 - 29229757
Alignment:
Q  92 taatttttacgtttaaatttattgttcatctcactttcatgtaaatatatccaaacataaa 152  Q
    ||||||||| ||||||||||||||||||  ||||||| |  |||||||||| |||||||||    
T  29229816 taatttttaggtttaaatttattgttca-atcacttttacataaatatatctaaacataaa 29229757  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 29343116 - 29343057
Alignment:
Q  92 taatttttacgtttaaatttattgttcatctcactttcatgtaaatatatccaaacataaa 152  Q
    ||||||||| ||||||||||||||||||  ||||||| |  |||||||||| |||||||||    
T  29343116 taatttttaggtttaaatttattgttca-atcacttttacataaatatatctaaacataaa 29343057  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 48089711 - 48089638
Alignment:
Q  110 ttattgttcatctcactttcatgtaaatatatccaaacataaa-cattttacattcaactcacttgtaagtagaa 183  Q
    |||||||||| | |||||| ||| |||| ||||||| |||||| ||||||||||||||||||||| ||| |||||    
T  48089711 ttattgttcaacccacttt-atgcaaatgtatccaatcataaatcattttacattcaactcacttttaactagaa 48089638  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 44570780 - 44570692
Alignment:
Q  92 taatttttacgtttaaatttattgttcatctcactttcatgtaaatatatccaaacataaa-cattttacattcaactcacttgtaagt 179  Q
    |||||||||| || |||||||||  ||| |||||||| || | ||||||  |||||||||| || ||||||||||||||| || |||||    
T  44570780 taatttttacattcaaatttatttatcaactcacttttatatgaatataatcaaacataaatcactttacattcaactcaattttaagt 44570692  T

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