View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_high_34 (Length: 274)
Name: NF9779_high_34
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 41750209 - 41750056
Alignment:
| Q |
12 |
aaaggatgttagagaaacttcctgaaatggaattgaacgaagaaatcaagaagctgaggaatgcatgttttaaagctaaatacaagaagagaagagcaat |
111 |
Q |
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| T |
41750209 |
aaaggatgttagagaaacttcctgaaatggaattgaacgaagaaatcaagaagctgaggaatgcatgtattaaagctaaatacaagaagagaagatcaat |
41750110 |
T |
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| Q |
112 |
taccctcaacccttgaatttcaacctcttttgcttgcagtaaaatgaagggtta |
165 |
Q |
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| T |
41750109 |
taccctcaacccttgaacttcaacctcttttgcttctaataaaatgaagggtta |
41750056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 41753528 - 41753398
Alignment:
| Q |
17 |
atgttagagaaacttcctgaaatggaattgaacgaagaaatcaagaagctgaggaatgcatgttttaaagctaaatacaagaagagaagagcaattaccc |
116 |
Q |
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| T |
41753528 |
atgttggagaaacttcctgaaatggaattgaatgaagagatcaaaaagctgaggcaagcatgttttagagctaagtatagcaagagaagattaattaccc |
41753429 |
T |
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| Q |
117 |
tcaacccttgaatttcaacctcttttgcttg |
147 |
Q |
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| T |
41753428 |
tcaatccttgaacttctacctcttttgcttg |
41753398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 41744753 - 41744636
Alignment:
| Q |
16 |
gatgttagagaaacttcctgaaatggaattgaacgaagaaatcaagaagctgaggaatgcatgttttaaagctaaatacaagaagagaagagcaattacc |
115 |
Q |
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| T |
41744753 |
gatgttggagaaacttccgggaatgcatttgaatgatgaaatcaagaagctgaggcaagcatgctttaaagctaattacaagaacagaaaactaattgcc |
41744654 |
T |
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| Q |
116 |
ctcaacccttgaatttca |
133 |
Q |
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| T |
41744653 |
ctctgtccttgaatttca |
41744636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 29589974 - 29590091
Alignment:
| Q |
16 |
gatgttagagaaacttcctgaaatggaattgaacgaagaaatcaagaagctgaggaatgcatgttttaaagctaaatacaagaagagaagagcaattacc |
115 |
Q |
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|||||| ||||||||||| | |||||| ||||| || |||||||||||||||||| | ||||| ||||||||||| |||||||| |||| | |||| || |
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| T |
29589974 |
gatgttggagaaacttccgggaatggatttgaatgacgaaatcaagaagctgaggcaagcatgctttaaagctaattacaagaacagaaaattaattgcc |
29590073 |
T |
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| Q |
116 |
ctcaacccttgaatttca |
133 |
Q |
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||| |||||||||||| |
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| T |
29590074 |
ctctgtccttgaatttca |
29590091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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