View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_high_40 (Length: 253)
Name: NF9779_high_40
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 54263725 - 54263948
Alignment:
| Q |
19 |
catttgtctattacagaatttaattttgtgcaggtggggctgttgtttggattggttctgtgttagcttagccggaaatagctatggtacagggggtgtt |
118 |
Q |
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| T |
54263725 |
catttgtctattacagaatttaattttgtgcaggtggggctgttgtttggattggttctgtgttagcttagccggaaatagctatggtacagggggtgtt |
54263824 |
T |
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| Q |
119 |
tgattgggttgtgttggggagtcctcaatattatgtggttatctcaggatggggaggggtttcaagtgtctattggatgttgagaggaggcatttggtag |
218 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
54263825 |
tgattgggttgtgtcggggagtcctcaatattatgtggttatctcaggatggggaggggtttcaagtgtctattggatgttgagaggaggcatctggtag |
54263924 |
T |
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| Q |
219 |
gagtatgactgcattatggttctt |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
54263925 |
gagtatgactgcattatggttctt |
54263948 |
T |
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