View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9779_high_44 (Length: 242)

Name: NF9779_high_44
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9779_high_44
NF9779_high_44
[»] chr2 (42 HSPs)
chr2 (142-225)||(12623771-12623854)
chr2 (19-90)||(38602373-38602444)
chr2 (19-89)||(7876711-7876781)
chr2 (19-89)||(33324815-33324885)
chr2 (20-89)||(4170554-4170623)
chr2 (22-88)||(6497703-6497769)
chr2 (19-89)||(16561797-16561867)
chr2 (19-89)||(28746703-28746773)
chr2 (19-89)||(40308948-40309018)
chr2 (19-89)||(20536772-20536842)
chr2 (22-90)||(7807428-7807496)
chr2 (19-91)||(22570932-22571004)
chr2 (23-91)||(35342312-35342380)
chr2 (19-89)||(1776487-1776557)
chr2 (22-87)||(1005512-1005577)
chr2 (22-91)||(18300967-18301036)
chr2 (25-87)||(2319274-2319336)
chr2 (21-86)||(4355325-4355390)
chr2 (19-88)||(45159349-45159418)
chr2 (25-89)||(6124170-6124234)
chr2 (26-86)||(22484267-22484327)
chr2 (22-86)||(24585530-24585593)
chr2 (26-93)||(14217212-14217279)
chr2 (19-89)||(4561785-4561855)
chr2 (25-94)||(44156589-44156658)
chr2 (33-89)||(12819298-12819354)
chr2 (21-89)||(31236239-31236307)
chr2 (22-89)||(5588104-5588171)
chr2 (21-84)||(37134351-37134414)
chr2 (26-86)||(21104482-21104542)
chr2 (26-80)||(8482975-8483029)
chr2 (26-88)||(14824146-14824208)
chr2 (20-86)||(34146180-34146246)
chr2 (25-86)||(3563851-3563912)
chr2 (30-86)||(25933565-25933621)
chr2 (22-78)||(35996651-35996707)
chr2 (26-86)||(43214572-43214632)
chr2 (23-86)||(40536242-40536305)
chr2 (20-87)||(12206024-12206091)
chr2 (22-69)||(40497439-40497486)
chr2 (174-224)||(11990990-11991040)
chr2 (25-78)||(3545638-3545691)
[»] chr6 (22 HSPs)
chr6 (19-92)||(1036877-1036950)
chr6 (21-91)||(27083980-27084050)
chr6 (19-91)||(26327150-26327222)
chr6 (22-86)||(8356958-8357022)
chr6 (19-86)||(234306-234373)
chr6 (22-88)||(32130713-32130779)
chr6 (20-89)||(10894625-10894693)
chr6 (19-76)||(31195920-31195977)
chr6 (20-86)||(7188831-7188894)
chr6 (19-89)||(3212474-3212544)
chr6 (19-77)||(32017986-32018044)
chr6 (25-94)||(31079604-31079673)
chr6 (21-88)||(3299139-3299206)
chr6 (20-88)||(25834548-25834616)
chr6 (20-86)||(13607837-13607903)
chr6 (23-88)||(6708096-6708161)
chr6 (26-86)||(29892966-29893026)
chr6 (19-79)||(31741207-31741267)
chr6 (19-88)||(7254928-7254997)
chr6 (20-80)||(13061357-13061417)
chr6 (19-86)||(19128153-19128220)
chr6 (25-86)||(11105286-11105347)
[»] chr1 (43 HSPs)
chr1 (19-90)||(37346899-37346970)
chr1 (19-89)||(6916925-6916995)
chr1 (19-89)||(28949292-28949362)
chr1 (19-89)||(38330424-38330494)
chr1 (19-89)||(52895764-52895834)
chr1 (19-86)||(20409605-20409672)
chr1 (19-89)||(1043224-1043294)
chr1 (9-90)||(43189651-43189732)
chr1 (19-94)||(36367743-36367818)
chr1 (19-86)||(37104120-37104187)
chr1 (19-89)||(1036456-1036526)
chr1 (9-89)||(38948729-38948809)
chr1 (25-91)||(8132178-8132244)
chr1 (19-89)||(9781639-9781709)
chr1 (25-89)||(3426845-3426909)
chr1 (25-85)||(5984228-5984288)
chr1 (21-92)||(34096605-34096676)
chr1 (19-89)||(2364674-2364744)
chr1 (20-89)||(2472906-2472975)
chr1 (21-89)||(29167944-29168012)
chr1 (19-89)||(13013043-13013113)
chr1 (22-84)||(41676043-41676105)
chr1 (19-91)||(24590166-24590238)
chr1 (26-88)||(14167082-14167144)
chr1 (38-88)||(24849362-24849412)
chr1 (22-88)||(25256614-25256680)
chr1 (31-89)||(34432446-34432504)
chr1 (19-88)||(3708330-3708399)
chr1 (30-86)||(10822402-10822458)
chr1 (37-80)||(38218404-38218447)
chr1 (21-84)||(40775997-40776060)
chr1 (19-77)||(28659351-28659409)
chr1 (19-89)||(30323712-30323782)
chr1 (19-89)||(31653453-31653523)
chr1 (19-88)||(29861799-29861868)
chr1 (19-88)||(48715276-48715345)
chr1 (37-85)||(36551492-36551540)
chr1 (22-81)||(33039618-33039677)
chr1 (30-84)||(32381121-32381175)
chr1 (48-89)||(14334169-14334209)
chr1 (22-72)||(9528893-9528943)
chr1 (19-79)||(10763668-10763726)
chr1 (25-62)||(47654706-47654743)
[»] chr8 (39 HSPs)
chr8 (19-89)||(34901433-34901503)
chr8 (19-89)||(36483432-36483502)
chr8 (19-88)||(2872961-2873030)
chr8 (19-91)||(6028482-6028554)
chr8 (9-89)||(28876607-28876687)
chr8 (19-90)||(32759369-32759440)
chr8 (19-89)||(16384614-16384684)
chr8 (19-89)||(32877434-32877504)
chr8 (20-89)||(13422205-13422274)
chr8 (19-89)||(22201388-22201458)
chr8 (25-89)||(43771761-43771825)
chr8 (19-86)||(32638907-32638974)
chr8 (19-89)||(4245937-4246007)
chr8 (22-88)||(19436272-19436338)
chr8 (22-88)||(19572421-19572487)
chr8 (19-88)||(25022123-25022192)
chr8 (22-79)||(32424928-32424985)
chr8 (19-88)||(40412433-40412502)
chr8 (26-89)||(12580611-12580674)
chr8 (21-84)||(19948049-19948112)
chr8 (22-89)||(37372256-37372323)
chr8 (21-81)||(5818364-5818424)
chr8 (30-89)||(37668579-37668638)
chr8 (22-89)||(45217274-45217341)
chr8 (19-89)||(5539433-5539501)
chr8 (22-88)||(27886188-27886254)
chr8 (22-88)||(27944846-27944912)
chr8 (9-89)||(38388664-38388744)
chr8 (19-86)||(7411636-7411703)
chr8 (26-86)||(12357889-12357948)
chr8 (26-86)||(12359017-12359076)
chr8 (21-89)||(29355620-29355688)
chr8 (22-86)||(27968103-27968167)
chr8 (22-86)||(28025089-28025153)
chr8 (19-89)||(32678-32748)
chr8 (31-80)||(20182380-20182429)
chr8 (42-86)||(28737255-28737299)
chr8 (25-88)||(3891960-3892023)
chr8 (59-88)||(41099377-41099406)
[»] chr7 (41 HSPs)
chr7 (19-89)||(40095644-40095714)
chr7 (19-95)||(34238146-34238222)
chr7 (19-89)||(25969391-25969461)
chr7 (19-89)||(27353915-27353985)
chr7 (19-89)||(48163402-48163472)
chr7 (20-88)||(11829684-11829752)
chr7 (25-89)||(39520794-39520858)
chr7 (25-88)||(42896997-42897060)
chr7 (20-86)||(1043123-1043189)
chr7 (22-88)||(4291507-4291573)
chr7 (19-81)||(36202829-36202891)
chr7 (19-89)||(38262993-38263063)
chr7 (19-86)||(34122668-34122735)
chr7 (19-89)||(47238658-47238728)
chr7 (26-91)||(11058344-11058409)
chr7 (25-86)||(16564415-16564476)
chr7 (25-86)||(16601186-16601247)
chr7 (19-75)||(9250473-9250529)
chr7 (9-89)||(26773753-26773833)
chr7 (19-89)||(16850780-16850850)
chr7 (22-88)||(27555423-27555489)
chr7 (26-88)||(33454065-33454127)
chr7 (22-88)||(44960189-44960255)
chr7 (23-88)||(23079095-23079160)
chr7 (21-86)||(27398100-27398165)
chr7 (19-78)||(26845947-26846006)
chr7 (23-89)||(554935-555001)
chr7 (19-88)||(19510518-19510587)
chr7 (25-91)||(35159857-35159923)
chr7 (25-86)||(15878401-15878462)
chr7 (26-86)||(36758054-36758114)
chr7 (26-86)||(36767578-36767638)
chr7 (22-88)||(38064590-38064656)
chr7 (20-89)||(21409385-21409454)
chr7 (19-91)||(35136051-35136123)
chr7 (27-76)||(8056389-8056438)
chr7 (20-85)||(18113991-18114055)
chr7 (31-80)||(44269729-44269778)
chr7 (21-77)||(48153620-48153676)
chr7 (22-77)||(49015120-49015175)
chr7 (44-89)||(24956244-24956290)
[»] chr5 (33 HSPs)
chr5 (19-89)||(32707882-32707952)
chr5 (19-89)||(39690814-39690884)
chr5 (19-89)||(1639833-1639903)
chr5 (9-91)||(10656815-10656897)
chr5 (25-94)||(12852111-12852180)
chr5 (20-86)||(30284659-30284725)
chr5 (19-89)||(30777573-30777643)
chr5 (20-86)||(33829753-33829819)
chr5 (19-88)||(30918376-30918445)
chr5 (20-91)||(26716268-26716339)
chr5 (20-91)||(26986008-26986079)
chr5 (19-86)||(41392763-41392830)
chr5 (19-89)||(9792316-9792386)
chr5 (19-88)||(1795390-1795459)
chr5 (19-88)||(32624875-32624944)
chr5 (25-89)||(26795050-26795114)
chr5 (22-84)||(26691618-26691680)
chr5 (22-84)||(26961350-26961412)
chr5 (25-89)||(6243215-6243279)
chr5 (26-85)||(17138312-17138370)
chr5 (26-84)||(11906220-11906278)
chr5 (19-89)||(32728760-32728830)
chr5 (19-85)||(42366154-42366220)
chr5 (9-90)||(5721984-5722064)
chr5 (37-86)||(7629070-7629119)
chr5 (19-88)||(22774552-22774621)
chr5 (20-88)||(35746303-35746371)
chr5 (23-86)||(3934843-3934906)
chr5 (26-77)||(14836390-14836441)
chr5 (25-79)||(27938170-27938224)
chr5 (19-88)||(5612493-5612562)
chr5 (25-77)||(41233388-41233440)
chr5 (19-76)||(15066148-15066205)
[»] chr4 (36 HSPs)
chr4 (11-89)||(5834827-5834905)
chr4 (19-91)||(52122920-52122992)
chr4 (19-86)||(8064160-8064227)
chr4 (19-85)||(19738698-19738764)
chr4 (25-89)||(14795020-14795084)
chr4 (19-86)||(38492310-38492377)
chr4 (22-91)||(41145607-41145676)
chr4 (19-92)||(5325772-5325845)
chr4 (23-89)||(28376993-28377059)
chr4 (19-89)||(42472620-42472690)
chr4 (19-86)||(2586336-2586403)
chr4 (9-92)||(10257694-10257777)
chr4 (26-87)||(3403633-3403694)
chr4 (22-91)||(40694065-40694134)
chr4 (24-88)||(53322335-53322399)
chr4 (19-86)||(1176981-1177048)
chr4 (31-89)||(47607107-47607165)
chr4 (20-86)||(52572210-52572276)
chr4 (20-76)||(52721274-52721330)
chr4 (19-86)||(17892248-17892315)
chr4 (19-86)||(36511985-36512052)
chr4 (19-86)||(44121893-44121960)
chr4 (25-87)||(31946262-31946324)
chr4 (25-86)||(55901196-55901257)
chr4 (22-89)||(46431987-46432053)
chr4 (35-84)||(51858834-51858883)
chr4 (26-77)||(27981905-27981956)
chr4 (25-88)||(51674856-51674919)
chr4 (25-76)||(21058843-21058894)
chr4 (25-88)||(37992590-37992653)
chr4 (48-78)||(726624-726654)
chr4 (48-78)||(754190-754220)
chr4 (25-79)||(24296505-24296559)
chr4 (23-57)||(36943708-36943742)
chr4 (25-86)||(36561771-36561831)
chr4 (22-86)||(3109359-3109423)
[»] chr3 (48 HSPs)
chr3 (19-89)||(7327709-7327779)
chr3 (19-88)||(35389748-35389817)
chr3 (19-91)||(22611425-22611497)
chr3 (19-89)||(40497327-40497397)
chr3 (19-89)||(37996862-37996932)
chr3 (19-88)||(19879144-19879213)
chr3 (19-88)||(42464958-42465027)
chr3 (20-88)||(22310703-22310771)
chr3 (19-86)||(48122825-48122892)
chr3 (19-86)||(53192498-53192565)
chr3 (22-89)||(55269066-55269133)
chr3 (19-89)||(1679749-1679819)
chr3 (19-91)||(13748498-13748570)
chr3 (9-89)||(52121177-52121257)
chr3 (25-91)||(6134439-6134505)
chr3 (23-89)||(28704724-28704790)
chr3 (30-87)||(19420904-19420961)
chr3 (21-86)||(22289774-22289839)
chr3 (26-87)||(28882736-28882797)
chr3 (25-86)||(47642017-47642078)
chr3 (25-89)||(10225208-10225272)
chr3 (19-85)||(28968511-28968577)
chr3 (22-88)||(29915859-29915925)
chr3 (22-88)||(29965012-29965078)
chr3 (25-91)||(30787619-30787685)
chr3 (19-86)||(1528502-1528569)
chr3 (19-86)||(30226420-30226487)
chr3 (23-89)||(41742127-41742193)
chr3 (19-89)||(52505884-52505953)
chr3 (19-88)||(42229672-42229741)
chr3 (22-87)||(52684200-52684265)
chr3 (25-89)||(2567444-2567508)
chr3 (22-76)||(49419245-49419299)
chr3 (20-88)||(2122702-2122773)
chr3 (19-88)||(21006536-21006605)
chr3 (20-89)||(38889132-38889200)
chr3 (19-78)||(13353237-13353296)
chr3 (19-86)||(19349641-19349708)
chr3 (50-89)||(33238720-33238759)
chr3 (19-89)||(25937115-25937184)
chr3 (19-89)||(45347296-45347364)
chr3 (21-75)||(47750943-47750997)
chr3 (20-91)||(25700757-25700826)
chr3 (22-77)||(20510210-20510265)
chr3 (23-76)||(5271489-5271542)
chr3 (19-88)||(21157780-21157849)
chr3 (21-86)||(7899772-7899837)
chr3 (38-78)||(983202-983242)
[»] scaffold0640 (1 HSPs)
scaffold0640 (19-89)||(8143-8213)
[»] scaffold0005 (1 HSPs)
scaffold0005 (25-89)||(44647-44711)
[»] scaffold0037 (1 HSPs)
scaffold0037 (22-89)||(27835-27902)
[»] scaffold0250 (1 HSPs)
scaffold0250 (19-89)||(5509-5579)
[»] scaffold0112 (1 HSPs)
scaffold0112 (25-86)||(42122-42183)
[»] scaffold0177 (1 HSPs)
scaffold0177 (25-89)||(25587-25651)
[»] scaffold0060 (1 HSPs)
scaffold0060 (19-89)||(30495-30565)
[»] scaffold0285 (1 HSPs)
scaffold0285 (22-84)||(13252-13314)
[»] scaffold0240 (1 HSPs)
scaffold0240 (9-88)||(10598-10677)
[»] scaffold0406 (1 HSPs)
scaffold0406 (31-89)||(13863-13921)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 12623771 - 12623854
Alignment:
Q  142 gtatatgattttgttcttaagagcttaacgttgttctcgacttcattctgtattgctaatcttatgcagaatgttattcttttt 225  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12623771 gtatatgatttagttcttaagagcttaacgttgttctcgacttcattctgtattgctaatcttatgcagaatgttattcttttt 12623854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 38602373 - 38602444
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacaga 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38602373 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacaga 38602444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 7876781 - 7876711
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7876781 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 7876711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 33324885 - 33324815
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33324885 gggcaggtatcggtgcaggatacgcaggggatacggtacatcatccattttgaagtatcggggcttcacag 33324815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 4170554 - 4170623
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4170554 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggagcttcacag 4170623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 6497703 - 6497769
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6497703 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgggacttcaca 6497769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 16561867 - 16561797
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16561867 gggcaggtatcggtgcagaatacgcaagggatacggtacgtcatccattttgaagtatcggggcttcacag 16561797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 28746703 - 28746773
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  28746703 gggcaggtatcggtgcaggatacgcaggggatacgatacgtcaaccattttgaagtatcggggcttcacag 28746773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 40308948 - 40309018
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  40308948 gggcaggtatcggtgcaggatacgcatgggatacggtacgtcatctattttgaagtatcggggcttcacag 40309018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 20536842 - 20536772
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  20536842 gggcaagtatcggtgcaggatatgcaggggatacgatacgtcatccattttgaagtatcggggcttcacag 20536772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 7807428 - 7807496
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacaga 90  Q
    ||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7807428 caggtatcggtacaagatacgcaggggatacgatacgtcatccattttgaagtatcggggcttcacaga 7807496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 22571004 - 22570932
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||| ||||    
T  22571004 gggcaggtatcggtgcaggatacgcagaggatacggtacgtcatctattttgaagtatctgggcttcatagat 22570932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 35342380 - 35342312
Alignment:
Q  23 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||    
T  35342380 aggtatcggtgcaggatacgcaagggatacggtacgtcatccattttgaagtatcgggacttcatagat 35342312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 1776487 - 1776557
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  1776487 gggcaggtatcggtgcagaatacgcaagggatacgatacgtcaaccattttgaagtatcggggcttcacag 1776557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 1005577 - 1005512
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcac 87  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||    
T  1005577 caggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcagagcttcac 1005512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 18301036 - 18300967
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    ||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  18301036 caggtatcggtgcagaatacacaggggatacgatacgtcatccattttgaagtatcagggcttcacagat 18300967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 2319336 - 2319274
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcac 87  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  2319336 gtatcggtgcaagatacgcaggggatacgatacgtcatccattttgaagtatcggggtttcac 2319274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 4355390 - 4355325
Alignment:
Q  21 gcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  4355390 gcaggtatcggtgcagaatacgcagggaatacgatacgtcatccattttgaagtatcgaggcttca 4355325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 45159349 - 45159418
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||| ||| |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  45159349 gggcagatattggtgcaagatacgcaagggatacgatacgtcatccattttgaagtatcggggcttcaca 45159418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 6124234 - 6124170
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||| |||||||||||||||||||    
T  6124234 gtatcggtgcaggatacacaggggatacaatacgtcatccattttaaagtatcggggcttcacag 6124170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 22484327 - 22484267
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  22484327 tatcgatgcaggatacgcagggaatacggtacatcatccattttgaagtatcggggcttca 22484267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 24585593 - 24585530
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  24585593 caggtatcggtgcaggatacgcaggg-atacgatacatcatccattttgaagtatcggggcttca 24585530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 14217212 - 14217279
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagatca 93  Q
    ||||||||||| |||||||||||||||  ||||||||||||||||||||||||| |||||| ||||||    
T  14217212 tatcggtgcagaatacgcaggggatacaatacgtcatccattttgaagtatcggagcttcagagatca 14217279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 4561855 - 4561785
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||| || || ||||| |||||||||||||||||||||| || |||||||||    
T  4561855 gggcaggtatcggtgcaggatacacaaggaatacgatacgtcatccattttgaagtattggagcttcacag 4561785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 44156658 - 44156589
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagatcat 94  Q
    |||||| |||| ||||||||||||||||| || |||||||||||||||||||||||| |||| |||||||    
T  44156658 gtatcgatgcatgatacgcaggggatacgatatgtcatccattttgaagtatcggggattcatagatcat 44156589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 12819354 - 12819298
Alignment:
Q  33 gcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||    
T  12819354 gcaggatacacaggggatacggtacatcatccattttgaagtatcagggcttcacag 12819298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 31236239 - 31236307
Alignment:
Q  21 gcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||| | |||||||||||||||||||||||  ||||| ||||||||| |||||||||||||||||||    
T  31236239 gcaggtgtgggtgcaggatacgcaggggatacaatacgttatccattttaaagtatcggggcttcacag 31236307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 5588171 - 5588104
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||| |||||  || ||||||| ||||||||||||||||||||||||| |||||||||    
T  5588171 caggtatcggtgcaagatacaaagaggatacgatacgtcatccattttgaagtatcggagcttcacag 5588104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 37134351 - 37134414
Alignment:
Q  21 gcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggctt 84  Q
    |||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  37134351 gcagatatcagtgcaggatacgcagaggatacggtacgtcatctattttgaagtatctgggctt 37134414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 21104542 - 21104482
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||| |||||| |||||||||    
T  21104542 tatcggtgcaagatacgcagaggatacgatacgtcatccattttaaagtattggggcttca 21104482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 8482975 - 8483029
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggg 80  Q
    |||||||||||||||||||  ||||||| |||||||| |||||||||||||||||    
T  8482975 tatcggtgcaggatacgcaaaggatacgatacgtcattcattttgaagtatcggg 8483029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 14824208 - 14824146
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||||||| |||||||| | |||||| ||||||||| |||||||||||||||| |||||||    
T  14824208 tatcggtgcatgatacgcaagagatacgatacgtcatctattttgaagtatcgggacttcaca 14824146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 34146246 - 34146180
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||| ||||||||||| ||||||||  |||||| ||||||||||||||| ||||||||| ||||||    
T  34146246 ggcagatatcggtgcagaatacgcagaagatacgatacgtcatccattttaaagtatcggagcttca 34146180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 3563912 - 3563851
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||| |||||| ||| | |||||||||  ||||||||||||||||||||||||||||||||    
T  3563912 gtatcagtgcagaatatgtaggggatacaatacgtcatccattttgaagtatcggggcttca 3563851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 25933621 - 25933565
Alignment:
Q  30 ggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||||||  ||||||||    
T  25933621 ggtgcatgatacgcaggggatacgatacatcatccattttgaagtatatgggcttca 25933565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 35996707 - 35996651
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcg 78  Q
    |||||||||||||| ||||||||||||||||  ||| |||| |||||||||||||||    
T  35996707 caggtatcggtgcaagatacgcaggggatacaatacatcattcattttgaagtatcg 35996651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 43214632 - 43214572
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||| |||||||||| || |||||||| ||||||||||||||||||||||| || |||||    
T  43214632 tatcgatgcaggatacacatgggatacgatacgtcatccattttgaagtatctggacttca 43214572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 40536305 - 40536242
Alignment:
Q  23 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||||||||||||||| | ||||| |||||| | ||||||||||||||  ||||||||    
T  40536305 aggtatcggtgcaggatacgcatgtgatacagtacgttacccattttgaagtatttgggcttca 40536242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 12206091 - 12206024
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcac 87  Q
    ||||||||||| |||| ||||| |||  |||||| ||||||||||||||| ||||| ||| |||||||    
T  12206091 ggcaggtatcgatgcaagatacacagatgatacgatacgtcatccattttaaagtaccggagcttcac 12206024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 40497439 - 40497486
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccatttt 69  Q
    ||||||||  |||| ||||||||||||||| |||||||||||||||||    
T  40497439 caggtatcactgcaagatacgcaggggataaggtacgtcatccatttt 40497486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 11991040 - 11990990
Alignment:
Q  174 gttctcgacttcattctgtattgctaatcttatgcagaatgttattctttt 224  Q
    ||||| ||||||| |||||||||||||  ||||||||||||||||| ||||    
T  11991040 gttcttgacttcaatctgtattgctaaatttatgcagaatgttattgtttt 11990990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 3545638 - 3545691
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcg 78  Q
    |||||||||||| ||||| |   |||||| ||||||||||||||||||||||||    
T  3545638 gtatcggtgcagaatacgtaaaagatacgatacgtcatccattttgaagtatcg 3545691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 1036877 - 1036950
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagatc 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036877 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagatc 1036950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 27084050 - 27083980
Alignment:
Q  21 gcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27084050 gcaggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttcacagat 27083980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 26327222 - 26327150
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||    
T  26327222 gggcaggtatcggtgcaggatacacaggagatacgatacgtcatccattttgaagtatcggggcttcacagat 26327150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 8357022 - 8356958
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  8357022 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcaggacttca 8356958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 234373 - 234306
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  234373 gggcaggtatcggtgcaggatacgcaggagatacgatacgtcaaccattttgaagtatcggggcttca 234306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 32130713 - 32130779
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  32130713 caggtatcagtgcaggatacgcaggggatacggtacgtcattcattttaaagtatcggggcttcaca 32130779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 10894625 - 10894693
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  10894625 ggcaggtatcggtgcatgatacgc-ggggatacggtacgtcatccattttgaagtatcagggcttcacag 10894693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 31195920 - 31195977
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtat 76  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31195920 gggcaggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtat 31195977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 7188831 - 7188894
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  7188831 ggcaggtatcggtgcaggatacgcaggggatacggta---catccattttgaagtatcggggcttca 7188894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 3212544 - 3212474
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||| |||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||    
T  3212544 gggcagatatcggtgcaggatacacaaggaatacgatacgtcatccattttgaagtatcggggcttcacag 3212474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 32018044 - 32017986
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatc 77  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32018044 gggcagatatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatc 32017986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 31079673 - 31079604
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagatcat 94  Q
    ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||| |||||| |||||||    
T  31079673 gtatcggtgcaggatacgcaggggatacaatacgtcatccattttaaagtatcggagcttcagagatcat 31079604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 3299206 - 3299139
Alignment:
Q  21 gcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||| ||||||||||    
T  3299206 gcaggtatcggtgcaggatatgcagaggatacggtacatcatctattttgaagtatcagggcttcaca 3299139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 25834548 - 25834616
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||| ||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||||||    
T  25834548 ggcatgtatcagtgcaggatacgcacgggatacgatacgtcatccaatttgaagtatcggggtttcaca 25834616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 13607837 - 13607903
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||| |||||||||| |||| ||||||| ||||||||||||||||||||||| ||| ||||    
T  13607837 ggcaggtatcagtgcaggatatgcagaggatacgatacgtcatccattttgaagtatcagggattca 13607903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 6708096 - 6708161
Alignment:
Q  23 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||||||||||| ||||| ||||||||||  || |||||||||||| ||||||||||||||||||    
T  6708096 aggtatcggtgcatgatacacaggggatacaatatgtcatccattttaaagtatcggggcttcaca 6708161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 29893026 - 29892966
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||| ||||||||||||||||||||| |||| ||||||||||| ||||||| ||||||||    
T  29893026 tatcgatgcaggatacgcaggggatacagtacatcatccattttaaagtatctgggcttca 29892966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 31741207 - 31741267
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 79  Q
    |||||||||||| |||| ||| || |||||||||| |||||||||||||||||||||||||    
T  31741207 gggcaggtatcgatgcatgatgcgtaggggatacgatacgtcatccattttgaagtatcgg 31741267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 7254997 - 7254928
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||| ||||||||||| ||||| ||||||||||| ||| || |||||||||||||||||  ||||||||    
T  7254997 gggcatgtatcggtgcatgatacacaggggatacgatacatcgtccattttgaagtatcgaagcttcaca 7254928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 13061357 - 13061417
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggg 80  Q
    ||||| ||||| |||||||||||||| | ||| |||||||||| |||||||||||||||||    
T  13061357 ggcagatatcgatgcaggatacgcagagaatatggtacgtcattcattttgaagtatcggg 13061417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 19128220 - 19128153
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||| ||||| |||||||||||| ||||||||||| ||||||| ||||||| |||||| || ||||||    
T  19128220 gggcgggtattggtgcaggatacacaggggatacgatacgtcaaccattttaaagtattggagcttca 19128153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 11105347 - 11105286
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||| |||||||||||||  | ||||||||||||||||||||| ||||||| | ||||||    
T  11105347 gtatcgatgcaggatacgcaaagaatacggtacgtcatccattttaaagtatcagagcttca 11105286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 37346899 - 37346970
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacaga 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37346899 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacaga 37346970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 6916925 - 6916995
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6916925 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 6916995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 28949292 - 28949362
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28949292 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 28949362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 38330494 - 38330424
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38330494 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 38330424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 52895764 - 52895834
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52895764 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 52895834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 20409605 - 20409672
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20409605 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 20409672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 1043294 - 1043224
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1043294 gggcaggtatcggtgcaggatacgcaggggatacggtacatcatccattttgaagtatcggggcttcacag 1043224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 43189732 - 43189651
Alignment:
Q  9 gagaagcatagggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacaga 90  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  43189732 gagaagtatcgggcaggtatcggtgcaggatacgcaggggatacggtacatcatccattttgaagtatcgggtcttcacaga 43189651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 36367743 - 36367818
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagatcat 94  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||    
T  36367743 gggcaggtatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcaggacttcacagatcat 36367818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 37104187 - 37104120
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37104187 gggcaggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttca 37104120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 1036526 - 1036456
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  1036526 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatgagggcttcacag 1036456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 38948809 - 38948729
Alignment:
Q  9 gagaagcatagggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  38948809 gagaagtattgggcagatatcggtgcaggatacgcaggggatacggtacgtcatccattttaaagtatcggagcttcacag 38948729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 8132244 - 8132178
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  8132244 gtatcggtgcaggatacgcaggggatacggtacgtcatctattttgaagtatcggagcttcacagat 8132178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 9781709 - 9781639
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||    
T  9781709 gggcaggtatcggtgcaggatacgcaggggatacgatacgtcaaccattttgaagtatcagggcttcacag 9781639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 3426909 - 3426845
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||    
T  3426909 gtatcggtgcaggatacgcaggggatacaatacgtcatccattttaaagtatcggggcttcacag 3426845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 5984288 - 5984228
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttc 85  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5984288 gtatcggtgcagaatacgcaggggatacagtacgtcatccattttgaagtatcggggcttc 5984228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 34096605 - 34096676
Alignment:
Q  21 gcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagatc 92  Q
    |||| |||||||||||||||||||||||||||| |||||||  ||||||||| |||||||||||||||||||    
T  34096605 gcagatatcggtgcaggatacgcaggggatacgatacgtcaatcattttgaaatatcggggcttcacagatc 34096676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 2364744 - 2364674
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| ||| |||||||    
T  2364744 gggcaggtatcgatgcaggatacgcaggggatatggtacgttatccattttgaagtatctgggtttcacag 2364674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 2472906 - 2472975
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||| |||||||||||| |||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  2472906 ggcaggtaccggtgcaggatatgcaggggatacgatacgtcatctattttgaagtatcggagcttcacag 2472975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 29168012 - 29167944
Alignment:
Q  21 gcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||| | ||||| ||||    
T  29168012 gcaggtatcggtgcaggatacgcaggggatatgatacgtcatccattttgaagtatggaggctttacag 29167944  T

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Target: chr1; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 13013043 - 13013113
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||| ||||| ||||| ||||||||||| || ||||||||||||||||||| ||||||||||||    
T  13013043 gggcaggtatcagtgcatgatacacaggggatacgatatgtcatccattttgaagtattggggcttcacag 13013113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 41676043 - 41676105
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggctt 84  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||| || |||||||||||    
T  41676043 caggtatcggtgcatgatacgcaggagatacggtacgtcatccattttaaaatatcggggctt 41676105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 24590166 - 24590238
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    ||||||||||| |||||||||||||| || |||||||||| ||||| |||||||||||||| |||||| ||||    
T  24590166 gggcaggtatcagtgcaggatacgcaaggaatacggtacgccatcccttttgaagtatcggcgcttcatagat 24590238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 14167144 - 14167082
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||||||||||||||||||| |||||| || ||||||||||||||||||||| | |||||||    
T  14167144 tatcggtgcaggatacgcaggtgatacgataagtcatccattttgaagtatcgagacttcaca 14167082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 24849412 - 24849362
Alignment:
Q  38 atacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  24849412 atacgcaggggatacggtacgtcatctattttgaagtatcggagcttcaca 24849362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 25256680 - 25256614
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||||||||| |||| | ||||||||    
T  25256680 caggtatcggtgcagaatacgcagaggatacagtacgtcatccattttgaaatatcagagcttcaca 25256614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 34432446 - 34432504
Alignment:
Q  31 gtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||||||| |||||||||    
T  34432446 gtgcatgatacgcaggggatacaatacgtcatccattttgaagtatcggagcttcacag 34432504  T

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Target: chr1; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 3708330 - 3708399
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||| |||| |||| |||||| |||| ||||||| ||||||||||||||||||||||||||| ||||||    
T  3708330 gggcatgtattggtgtaggatatgcagaggatacgatacgtcatccattttgaagtatcggggtttcaca 3708399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 10822458 - 10822402
Alignment:
Q  30 ggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||||||||||| ||| | |||||||||||||||||||||||| |||||||    
T  10822458 ggtgcaggatacgcagggaatatgatacgtcatccattttgaagtatcgaggcttca 10822402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 38218447 - 38218404
Alignment:
Q  37 gatacgcaggggatacggtacgtcatccattttgaagtatcggg 80  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  38218447 gatacgcaagggatacggtacgtcatccattttgaagtatcggg 38218404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 40776060 - 40775997
Alignment:
Q  21 gcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggctt 84  Q
    |||| ||| |||||||||||||||||||||||  |||||| |||||||||||||||| ||||||    
T  40776060 gcagatattggtgcaggatacgcaggggatacattacgtcttccattttgaagtatctgggctt 40775997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 28659351 - 28659409
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatc 77  Q
    ||||| ||||||||||| ||||||||||| |||| |||||||||||||||| |||||||    
T  28659351 gggcatgtatcggtgcatgatacgcagggaataccgtacgtcatccattttaaagtatc 28659409  T

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Target: chr1; HSP #33
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 30323782 - 30323712
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||| |||| ||||||||||| ||| | ||||| | |||||||||||||||||||||||||||| ||||    
T  30323782 gggcagatatcagtgcaggatacacagagaatacgttgcgtcatccattttgaagtatcggggctttacag 30323712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 31653453 - 31653523
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||| |||||||||| ||||| || |||||||| ||| | ||||||||||||||||| |||||||||||    
T  31653453 gggcagatatcggtgcatgatacacaagggatacgatacattatccattttgaagtatcagggcttcacag 31653523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 29861868 - 29861799
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||||| | |||||| |||||| ||| |||||  ||||||| ||||||||||||||||||||||||||    
T  29861868 gggcaggtgtgggtgcatgatacgtaggagatacaatacgtcaaccattttgaagtatcggggcttcaca 29861799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 48715276 - 48715345
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||| |||||||||| |||||||||||| |||||| |||   ||||||||||||||||||||| ||||||    
T  48715276 gggccggtatcggtgtaggatacgcaggagatacgatacaatatccattttgaagtatcggggtttcaca 48715345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 36551540 - 36551492
Alignment:
Q  37 gatacgcaggggatacggtacgtcatccattttgaagtatcggggcttc 85  Q
    ||||||||||||| || |||||||||| |||||||||||||||||||||    
T  36551540 gatacgcaggggagacagtacgtcatcaattttgaagtatcggggcttc 36551492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 33039677 - 33039618
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgggg 81  Q
    ||||||||||||||||||||||| |||||||  || || ||||||||| |||||||||||    
T  33039677 caggtatcggtgcaggatacgcaagggatacaatatgttatccattttaaagtatcgggg 33039618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 32381121 - 32381175
Alignment:
Q  30 ggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggctt 84  Q
    |||||| |||| |||||||||||||||  ||||||||||| ||||||||||||||    
T  32381121 ggtgcatgatatgcaggggatacggtatatcatccattttaaagtatcggggctt 32381175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 14334209 - 14334169
Alignment:
Q  48 gatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  14334209 gatacggtacgtcatccattttgaagtatc-gggcttcacag 14334169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 9528893 - 9528943
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaa 72  Q
    |||||||||||||| ||||| || |||||||  ||||||||||||||||||    
T  9528893 caggtatcggtgcaagatacacaagggatacaatacgtcatccattttgaa 9528943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 10763726 - 10763668
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 79  Q
    |||||| ||| ||||||||||  |||||||||||| ||||||| ||||||| |||||||||    
T  10763726 gggcagatattggtgcaggat--gcaggggatacgatacgtcaaccattttaaagtatcgg 10763668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 47654743 - 47654706
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcat 62  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  47654743 gtatcggtgcagaatacgcaggggatacgatacgtcat 47654706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 34901433 - 34901503
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34901433 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 34901503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 36483502 - 36483432
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36483502 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 36483432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 2872961 - 2873030
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2872961 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 2873030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 6028554 - 6028482
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6028554 gggcagatatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 6028482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 28876607 - 28876687
Alignment:
Q  9 gagaagcatagggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28876607 gagaagtatcgggcaggtatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcggggcttcacag 28876687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 32759440 - 32759369
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacaga 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32759440 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgaggcttcacaga 32759369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 16384684 - 16384614
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16384684 gggcaggtatcggtgcaggatactcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 16384614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 32877504 - 32877434
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32877504 gggcaggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttcacag 32877434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 13422274 - 13422205
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13422274 ggcaggtatcggtgcaggatatgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 13422205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 22201388 - 22201458
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  22201388 gggcaggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcgggacttcacag 22201458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 43771761 - 43771825
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43771761 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggtttcacag 43771825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 32638907 - 32638974
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  32638907 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcagagcttca 32638974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 4246007 - 4245937
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||    
T  4246007 gggcaggtatcggtgcaggatatgcaggggatacggtacgtcatctattttgaagcatcggggcttcacag 4245937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 19436338 - 19436272
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  19436338 caggtatcggtgcaggatacgcaagggatacggtacgtcatccattttgaagtatcggagcttcaca 19436272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 19572487 - 19572421
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  19572487 caggtatcggtgcaggatacgcaagggatacggtacgtcatccattttgaagtatcggagcttcaca 19572421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 25022192 - 25022123
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||    
T  25022192 gggcaggtatcggtgcaggatacgcaggagatacggtatgtcatccattttgaagtattggggcttcaca 25022123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 32424985 - 32424928
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 79  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32424985 caggtatcggtgcaggatacgcaagggatacggtacgtcatccattttgaagtatcgg 32424928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 40412502 - 40412433
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||    
T  40412502 gggcaggtaacggtgcaggatacgcaggggatacgatacatcatccattttgaagtattggggcttcaca 40412433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 12580611 - 12580674
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||    
T  12580611 tatcggtgcaggatacgcaggagatacggtacatcatctattttgaagtatcggggcttcacag 12580674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 19948049 - 19948112
Alignment:
Q  21 gcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggctt 84  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||    
T  19948049 gcaggtatcggtgcaggatacgcaggggatatgatacgtcatccattttgaagtatcagggctt 19948112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 37372323 - 37372256
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||    
T  37372323 caggtatcagtgcaggatacgcaggagatacgatacgtcatccattttgaagtatcggagcttcacag 37372256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 5818364 - 5818424
Alignment:
Q  21 gcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgggg 81  Q
    |||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  5818364 gcaggtatcggtgcaggatacgcaagtgatacgatacgtcatccattttgaagtatcgggg 5818424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 37668638 - 37668579
Alignment:
Q  30 ggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  37668638 ggtgcaagatacgcagggaatacggtacgtcatccattttgaagtatcggggtttcacag 37668579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 45217274 - 45217341
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||||||||  ||  ||||||||||| |||||||||||||||||||    
T  45217274 caggtatcggtgcaggatacgcaggggatacaatatatcatccattttaaagtatcggggcttcacag 45217341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 5539501 - 5539433
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||||||||    
T  5539501 gggcaggtatcggtgcaggatacgca-gggatacagtacatcatccattttgaagtatc-gggcttcacag 5539433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 27886254 - 27886188
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||||||||||||||||| |||||| ||||  |||||||||||||||||||||||||| |||||||    
T  27886254 caggtatcggtgcaggatatgcagggaatacaatacgtcatccattttgaagtatcgggacttcaca 27886188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 27944912 - 27944846
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||||||||||||||||| |||||| ||||  |||||||||||||||||||||||||| |||||||    
T  27944912 caggtatcggtgcaggatatgcagggaatacaatacgtcatccattttgaagtatcgggacttcaca 27944846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 38388744 - 38388664
Alignment:
Q  9 gagaagcatagggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||| || || |||||||||||||||||||||||| ||||||  |||  |||||||||||||||||||||| |||||||    
T  38388744 gagaagtatcggacaggtatcggtgcaggatacgcagaggatacaatacagcatccattttgaagtatcggggtttcacag 38388664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 7411703 - 7411636
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||||| |||||||||| ||| ||||||| |||| |||||||||||||||||||| ||||||    
T  7411703 gggcaggtatcgatgcaggatacacagtggatacgatacgccatccattttgaagtatcggagcttca 7411636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 12357948 - 12357889
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||    
T  12357948 tatcggtgcaggatacacagaggatacg-tacgtcatccattttgaagtatccgggcttca 12357889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 12359076 - 12359017
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||    
T  12359076 tatcggtgcaggatacacagaggatacg-tacgtcatccattttgaagtatccgggcttca 12359017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 29355688 - 29355620
Alignment:
Q  21 gcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||| ||||| |||||||||| ||||||||| | || |||||||||||||||||||| |||||||||||    
T  29355688 gcagctatcgatgcaggatacccaggggatatgatatgtcatccattttgaagtatcagggcttcacag 29355620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 27968167 - 27968103
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||||||||||||| |||||| ||||  ||||||||| ||||| |||||||||| |||||    
T  27968167 caggtatcggtgcaggatatgcagggaatacaatacgtcatctatttttaagtatcgggacttca 27968103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 28025153 - 28025089
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||||||||||||| |||||| ||||  ||||||||| ||||| |||||||||| |||||    
T  28025153 caggtatcggtgcaggatatgcagggaatacaatacgtcatctatttttaagtatcgggacttca 28025089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 32748 - 32678
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||| ||||| |||||||||| ||| ||||| | ||||||| ||||||| |||||||||||||| ||||    
T  32748 gggcagatatcgatgcaggatacacagaggatatgatacgtcaaccattttaaagtatcggggctttacag 32678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 20182429 - 20182380
Alignment:
Q  31 gtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggg 80  Q
    |||||||||| ||| ||||||| ||||||||||||| |||||||||||||    
T  20182429 gtgcaggatatgcacgggataccgtacgtcatccatcttgaagtatcggg 20182380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 28737299 - 28737255
Alignment:
Q  42 gcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||||  |||||||||||||||||| |||||||||||||    
T  28737299 gcaggggatacaatacgtcatccattttgaaatatcggggcttca 28737255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 3892023 - 3891960
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||||||||| |||||| ||| ||||   ||||||||||||||||||| ||||||| ||||||    
T  3892023 gtatcggtgcatgatacgtaggagatataatacgtcatccattttgaagaatcggggtttcaca 3891960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 88
Target Start/End: Original strand, 41099377 - 41099406
Alignment:
Q  59 tcatccattttgaagtatcggggcttcaca 88  Q
    ||||||||||||||||||||||||||||||    
T  41099377 tcatccattttgaagtatcggggcttcaca 41099406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 40095714 - 40095644
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40095714 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 40095644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 34238222 - 34238146
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagatcatg 95  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34238222 gggcaggtatcggtgcagaatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagttcatg 34238146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 25969461 - 25969391
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25969461 gggcaggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttcacag 25969391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 27353985 - 27353915
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27353985 gggcaggtatcggtgcaggatacgcagggaatacggtacgtcatccattttgaagtatcggggcttcacag 27353915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 48163472 - 48163402
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48163472 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcacccattttgaagtatcggggcttcacag 48163402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 11829752 - 11829684
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11829752 ggcagatatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 11829684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 39520858 - 39520794
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39520858 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 39520794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 42897060 - 42896997
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42897060 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 42896997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 1043123 - 1043189
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1043123 ggcaggtatcgatgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttca 1043189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 4291573 - 4291507
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  4291573 caggtatcggtgcaggatacgcaggggatacggtacatcatccattttaaagtatcggggcttcaca 4291507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 36202829 - 36202891
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgggg 81  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36202829 gggcaggcatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgggg 36202891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 38263063 - 38262993
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  38263063 gggcaggtatcgatgcaggatacgcagagaatacggtacgtcatccattttgaagtatcggggcttcacag 38262993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 34122668 - 34122735
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||    
T  34122668 gggcaggtatcggtgcaggatacgcagaggatacggtacgtcatccattttgaagtatctaggcttca 34122735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 47238658 - 47238728
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  47238658 gggcaggtatcggtgcaatatacgcaggggatacgatacatcatccattttgaagtatcggggcttcacag 47238728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 11058409 - 11058344
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||    
T  11058409 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtacctggacttcacagat 11058344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 16564415 - 16564476
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16564415 gtatcggggcaggatacgcaggggatacggtacgtcatccattttgaagtatcgggacttca 16564476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 16601247 - 16601186
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16601247 gtatcggggcaggatacgcaggggatacggtacgtcatccattttgaagtatcgggacttca 16601186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 9250473 - 9250529
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagta 75  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9250473 gggcaggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagta 9250529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 26773753 - 26773833
Alignment:
Q  9 gagaagcatagggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||| || |||||| ||||||||||||||||||| |||||||| ||||||||| ||||| |||||||||||||||||||    
T  26773753 gagaagtatcgggcagatatcggtgcaggatacgcaagggatacgatacgtcatcaattttaaagtatcggggcttcacag 26773833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 16850850 - 16850780
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  16850850 gggcaagtatcggtgcatgatacacagggaatacggtacgtcatccattttgaaatatcggggcttcacag 16850780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 27555423 - 27555489
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||||||||    
T  27555423 caggtatcggtgcagaatacgcagagaatacggtacgtcatccattttgaagtatcagggcttcaca 27555489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 33454127 - 33454065
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  33454127 tatcagtgcaggatacgcaggggatacgatacgtcatccattttgaaatatcggggcttcaca 33454065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 44960189 - 44960255
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  44960189 caggtgtcagtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggagcttcaca 44960255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 23079095 - 23079160
Alignment:
Q  23 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  23079095 aggtatcgatccaggatacgcaggggatacggtatgtcatccattttgaagtatcggggctacaca 23079160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 27398100 - 27398165
Alignment:
Q  21 gcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||    
T  27398100 gcaggtatcagtgcaggatacgcaggggatacagtacgtcatccattttaaagtatccgggcttca 27398165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 26845947 - 26846006
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcg 78  Q
    |||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||    
T  26845947 gggcaggtatcggtgcaggatacgcatgagatacggtacatcatccattttgaagtatcg 26846006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 554935 - 555001
Alignment:
Q  23 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||| ||||||||||| ||||||||| |||||  ||||||||||||||||||    
T  554935 aggtatcggtgcaggatacacaggggatacgatacgtcatctattttagagtatcggggcttcacag 555001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 19510587 - 19510518
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||    
T  19510587 gggcatgtatcagtgcatgatacacaggggatacgatacgtcatccattttgaagtatcggggtttcaca 19510518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 35159923 - 35159857
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    |||||||||||| ||| |||||||||||| ||| ||||||||||||||||||||| |||||| ||||    
T  35159923 gtatcggtgcagaatatgcaggggatacgatacatcatccattttgaagtatcggagcttcatagat 35159857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 15878401 - 15878462
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||  |||||||| |||||||||||||| |||||| |||||||||||||||||||||    
T  15878401 gtatcggtataggatacgtaggggatacggtacatcatccgttttgaagtatcggggcttca 15878462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 36758054 - 36758114
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||||| |||||||||||||||| ||| |||| ||||||||||||| |||||||||    
T  36758054 tatcggtgcagaatacgcaggggatacgatacatcattcattttgaagtattggggcttca 36758114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 36767578 - 36767638
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||||| |||||||||||||||| ||| |||| ||||||||||||| |||||||||    
T  36767578 tatcggtgcagaatacgcaggggatacgatacatcattcattttgaagtattggggcttca 36767638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 38064656 - 38064590
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||||| ||||| |||||||| | |||||| || |||||||||||| ||||||||||||||||||    
T  38064656 caggtatcagtgcatgatacgcatgagatacgttatgtcatccattttaaagtatcggggcttcaca 38064590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 21409454 - 21409385
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||| ||||||||||  |||| |||||| ||||||||||||||| ||||||  |||||||||||    
T  21409454 ggcaggtatcagtgcaggatatacaggagatacgatacgtcatccatttttaagtatgagggcttcacag 21409385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 35136123 - 35136051
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    |||||| |||||||||| ||||| ||||  ||||||||||||| ||||||||||||||| | |||||| ||||    
T  35136123 gggcagatatcggtgcaagatacccaggaaatacggtacgtcacccattttgaagtatccgagcttcatagat 35136051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 8056389 - 8056438
Alignment:
Q  27 atcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtat 76  Q
    |||||| || ||||||||  ||||||||||||||||||||||||||||||    
T  8056389 atcggtacaagatacgcaaaggatacggtacgtcatccattttgaagtat 8056438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 18113991 - 18114055
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttc 85  Q
    ||||| ||||||||||||||||  || ||||| |||||||||||||||||||| |||| |||||||    
T  18113991 ggcagatatcggtgcaggatacatagaggatatggtacgtcatccattttgaa-tatctgggcttc 18114055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 44269778 - 44269729
Alignment:
Q  31 gtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggg 80  Q
    |||||||||| ||| ||||||| ||||||||||||| |||||||||||||    
T  44269778 gtgcaggatatgcacgggataccgtacgtcatccatcttgaagtatcggg 44269729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 48153676 - 48153620
Alignment:
Q  21 gcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatc 77  Q
    |||||||||||||||| ||||| || ||||||| ||| ||||||||||| |||||||    
T  48153676 gcaggtatcggtgcagaatacggagaggatacgatacatcatccattttaaagtatc 48153620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 49015120 - 49015175
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatc 77  Q
    |||||||||||| | ||||| || | ||||||||| ||||||||||||||||||||    
T  49015120 caggtatcggtgtatgatacacatgagatacggtatgtcatccattttgaagtatc 49015175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 24956290 - 24956244
Alignment:
Q  44 aggggatacggtacgtcatccattttgaagtatc-ggggcttcacag 89  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||||||    
T  24956290 aggggatacgatacgtcatcaattttgaagtatctggggcttcacag 24956244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 32707882 - 32707952
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32707882 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 32707952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 39690814 - 39690884
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39690814 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 39690884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 1639833 - 1639903
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1639833 gggcaggtatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcggggcttcacag 1639903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 10656897 - 10656815
Alignment:
Q  9 gagaagcatagggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    |||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  10656897 gagaagtatcgggcaggtatcggtgcaggatacgcaggggatacgatacgtcatccattttaaagtatcggggcttcacagat 10656815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 12852180 - 12852111
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagatcat 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12852180 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacaggtcat 12852111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 30284659 - 30284725
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30284659 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggagcttca 30284725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 30777573 - 30777643
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  30777573 gggcaggtatcggtgcaggatacgcaagggatacgatacgtcatccattttgaagtatcggggcttcacag 30777643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 33829819 - 33829753
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33829819 ggcatgtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 33829753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 30918445 - 30918376
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  30918445 gggcaggtatcggtgcaggatacgcaggggatacaatacgtcatccattttgaagtatcggggcttcaca 30918376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 26716339 - 26716268
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  26716339 ggcaggtatcggtgtaggatacgcaggggatacgatacgtcatccattttgaagtatcgaggcttcacagat 26716268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 26986079 - 26986008
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  26986079 ggcaggtatcggtgtaggatacgcaggggatacgatacgtcatccattttgaagtatcgaggcttcacagat 26986008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 41392763 - 41392830
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  41392763 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatctggacttca 41392830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 9792386 - 9792316
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  9792386 gggcaggtatcgatgcaggatacacaggggatacggtacgtcatccattttaaagtatcggggcttcacag 9792316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 1795459 - 1795390
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  1795459 gggcaggtatcggtgcaggatacggaggggatacgatacgtcaaccattttgaagtatcggggcttcaca 1795390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 32624944 - 32624875
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  32624944 gggcaggtatcgatgcaagatacacaggggatacggtacgtcatccattttgaaatatcggggcttcaca 32624875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 26795050 - 26795114
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||    
T  26795050 gtatcggtgcaggatacgcaggggatacgatacgtcatccattttaaagtatcagggcttcacag 26795114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 26691680 - 26691618
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggctt 84  Q
    ||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||    
T  26691680 caggtatcggtgcagaatacgcaggggatacgatacgtcatctattttgaagtatcggggctt 26691618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 26961412 - 26961350
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggctt 84  Q
    ||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||    
T  26961412 caggtatcggtgcagaatacgcaggggatacgatacgtcatctattttgaagtatcggggctt 26961350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 6243215 - 6243279
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||| ||||||  ||||||||||||||||||||||||| |||||||||    
T  6243215 gtatcggtgcaggatacgcagaggatacaatacgtcatccattttgaagtatcggagcttcacag 6243279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 17138312 - 17138370
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttc 85  Q
    |||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  17138312 tatcggtgcaggatacgcaggggatac-atacgtcatctattttgaagtatcggggcttc 17138370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 11906278 - 11906220
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggctt 84  Q
    |||||||||||||||||||||| ||||  |||||||||||||||||||||||| |||||    
T  11906278 tatcggtgcaggatacgcagggaatacaatacgtcatccattttgaagtatcgaggctt 11906220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 32728760 - 32728830
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||| |||| ||||||||||||||||  ||| ||||| ||||||||||||||| |||||||||    
T  32728760 gggcaggtatcgatgcaagatacgcaggggatacaatacatcatcaattttgaagtatcggagcttcacag 32728830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 42366154 - 42366220
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttc 85  Q
    ||||||||||| |||||||||||||||||||||| |||| ||||| |||||||||||| || |||||    
T  42366154 gggcaggtatcagtgcaggatacgcaggggatacagtacatcatctattttgaagtattggagcttc 42366220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 5722064 - 5721984
Alignment:
Q  9 gagaagcatagggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacaga 90  Q
    |||||| || ||||| ||||| ||||||||||||||||||||||| ||||||||| ||||| || |||| ||||||||||||    
T  5722064 gagaagtatcgggcatgtatcagtgcaggatacgcaggggatacgatacgtcatcaattttaaaatatc-gggcttcacaga 5721984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 7629119 - 7629070
Alignment:
Q  37 gatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  7629119 gatacgcaggggatacgatacgtcatccattttgaggtatcagggcttca 7629070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 22774621 - 22774552
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||| ||||||||||||||| |||||||||||| |||| || ||||||| |||||||| | |||||||    
T  22774621 gggcagatatcggtgcaggatatgcaggggatacgatacgccaaccattttaaagtatcgagacttcaca 22774552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 35746303 - 35746371
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||||||||| |||| |||||| ||| |||||  ||||||||| ||||||||||||||| ||||||||    
T  35746303 ggcaggtatcgatgcatgatacgtaggagatacaatacgtcatctattttgaagtatcggagcttcaca 35746371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 3934843 - 3934906
Alignment:
Q  23 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||||| ||||||||||||||||   ||||||||||||||| |||||| | |||||||    
T  3934843 aggtatcggtgcgggatacgcaggggatataatacgtcatccattttaaagtatggaggcttca 3934906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 14836441 - 14836390
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatc 77  Q
    ||||| |||||||||||||||||||||  ||||||| |||||||||||||||    
T  14836441 tatcgatgcaggatacgcaggggatacaatacgtcaaccattttgaagtatc 14836390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 27938224 - 27938170
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 79  Q
    ||||||||||| |||||||| | |||||  |||||||||||||||||||||||||    
T  27938224 gtatcggtgcatgatacgcatgagatacaatacgtcatccattttgaagtatcgg 27938170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 5612493 - 5612562
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||| ||||  |||||||| | ||| | ||||| ||||||||||||||||||||||| ||||||||||    
T  5612493 gggcagttatcaatgcaggatgcacagagaatacgatacgtcatccattttgaagtatctgggcttcaca 5612562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 41233440 - 41233388
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatc 77  Q
    |||||| ||||||||||| |||  ||||| |||||||||||||||||||||||    
T  41233440 gtatcgttgcaggatacgtaggaaatacgatacgtcatccattttgaagtatc 41233388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 15066205 - 15066148
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtat 76  Q
    |||||| ||||||||||| |||| || |||||||| ||| ||||| ||||||||||||    
T  15066205 gggcagatatcggtgcagaatacacatgggatacgatacatcatctattttgaagtat 15066148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 5834905 - 5834827
Alignment:
Q  11 gaagcatagggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5834905 gaagcatcgggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggagcttcacag 5834827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 52122920 - 52122992
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  52122920 gggcaggtatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcggggcttcacagat 52122992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 8064160 - 8064227
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8064160 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 8064227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 19738764 - 19738698
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttc 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19738764 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttc 19738698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 14795084 - 14795020
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14795084 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 14795020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 38492310 - 38492377
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38492310 gggcaggtatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcggggcttca 38492377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 41145676 - 41145607
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41145676 caggtatcgatgcaggatacgcaggggatacagtacgtcatccattttgaagtatcggggcttcacagat 41145607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 5325772 - 5325845
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagatc 92  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||| |||||    
T  5325772 gggcaggtatcggtgcaggatacgcaggggatacaatacgtcatccattttaaagtatcggggcttcatagatc 5325845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 28377059 - 28376993
Alignment:
Q  23 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||    
T  28377059 aggtatcggtgcaggatacacaggagatacgatacgtcatccattttgaagtatcggggcttcacag 28376993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 42472620 - 42472690
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||    
T  42472620 gggcaagtatcggtgcaggatacgcagggaatacagtacgtcatccattttgaagtatcgggacttcacag 42472690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 2586403 - 2586336
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||| |||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  2586403 gggcaggtgtcggtgaaggatactcaggggatacggtacgtcatccattttaaagtatcggggcttca 2586336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 10257777 - 10257694
Alignment:
Q  9 gagaagcatagggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagatc 92  Q
    |||||| || |||||||||||| | ||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||    
T  10257777 gagaagtatcgggcaggtatcgatacagaatacgcagcggatacgatacatcatccattttgaagtatcggggcttcacagatc 10257694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 3403633 - 3403694
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcac 87  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  3403633 tatcagtgcaggatacacaggggatacggtacgtcatccattttgaagtattggggcttcac 3403694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 40694134 - 40694065
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    ||||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||||||||||| ||||    
T  40694134 caggtatcggtgcagaatacgcatgggatacgatacatcatccattttgaagtatcggggcttcatagat 40694065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 53322399 - 53322335
Alignment:
Q  24 ggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||| ||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||    
T  53322399 ggtatcagtgcaggatacgcaaaggatacgatacgtcatccattttgaagtatcggggcttcaca 53322335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 1177048 - 1176981
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||| ||||||||||||| |||||||||| ||||||| | ||||||||||||||||||||||    
T  1177048 gggcaggtatgggtgcaggatacgtaggggatacgatacgtcaactattttgaagtatcggggcttca 1176981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 47607165 - 47607107
Alignment:
Q  31 gtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||    
T  47607165 gtgcaggatacgcaggagatacgatatgtcatccattttgaagtatcggggcttcacag 47607107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 52572276 - 52572210
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||||||||| ||| | |||||||||||| |||||||||||||| ||||||||||||||||    
T  52572276 ggcaggtatcggtgcatgatgcacaggggatacggaacgtcatccattttaaagtatcggggcttca 52572210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 52721330 - 52721274
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtat 76  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  52721330 ggcagatatcggtgcaggatacgcaggggatacgatacgtcatctattttgaagtat 52721274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 17892315 - 17892248
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||||||||| | |||||||| | ||||||||||||| |||||||||||||||||| ||||||    
T  17892315 gggcaggtatcggtgtatgatacgcatgagatacggtacgtcgtccattttgaagtatcggagcttca 17892248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 36511985 - 36512052
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||| ||||||| |||||||||||| |||||||  ||||||| ||||||||||||||||||||||||    
T  36511985 gggcaagtatcggcgcaggatacgcacgggatacaatacgtcaaccattttgaagtatcggggcttca 36512052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 44121893 - 44121960
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||||||||||||||||||||  |||||| |||||| |||||||||||||||  ||||||||    
T  44121893 gggcaggtatcggtgcaggatacgcagaagatacgatacgtcgtccattttgaagtatgtgggcttca 44121960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 31946262 - 31946324
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcac 87  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||  |||||||    
T  31946262 gtatcggtgcaggatacgcagggaatacgatacgtcatccattttaaagtatcgaagcttcac 31946324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 55901196 - 55901257
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||| ||||    
T  55901196 gtatcggtgcaggatacacaggggatacgatacgtcatctattttaaagtatcggggtttca 55901257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 46431987 - 46432053
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||| ||||||||| |||| ||||||| |||||||||| |||||||||||| |||||||||||    
T  46431987 caggtatcgttgcaggatatgcagaggatacgatacgtcatccgttttgaagtatc-gggcttcacag 46432053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 51858883 - 51858834
Alignment:
Q  35 aggatacgcaggggatacggtacgtcatccattttgaagtatcggggctt 84  Q
    |||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  51858883 aggatacgcaggagatacgatacgtcatccattttaaagtatcggggctt 51858834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 27981956 - 27981905
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatc 77  Q
    |||||||| ||||| |||||| |||||| |||||||||||||||||||||||    
T  27981956 tatcggtggaggatgcgcaggagatacgatacgtcatccattttgaagtatc 27981905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 51674919 - 51674856
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||| |||||| ||| ||||| |||||| ||||||||| ||||||||||||||| ||||||||    
T  51674919 gtatcagtgcagaatatgcaggagatacgatacgtcatctattttgaagtatcggcgcttcaca 51674856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 21058894 - 21058843
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtat 76  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||| ||||||    
T  21058894 gtatcggtgcaggatacacagtggatacgctacgtcattcattttaaagtat 21058843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 37992590 - 37992653
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||||||||| ||| |||| |||||||  |||||| |||||||||||||| ||| ||||||||    
T  37992590 gtatcggtgcaagatccgcaagggatacaatacgtcttccattttgaagtaccggagcttcaca 37992653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 78
Target Start/End: Original strand, 726624 - 726654
Alignment:
Q  48 gatacggtacgtcatccattttgaagtatcg 78  Q
    |||||||||||||||||||||||||||||||    
T  726624 gatacggtacgtcatccattttgaagtatcg 726654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 78
Target Start/End: Complemental strand, 754220 - 754190
Alignment:
Q  48 gatacggtacgtcatccattttgaagtatcg 78  Q
    |||||||||||||||||||||||||||||||    
T  754220 gatacggtacgtcatccattttgaagtatcg 754190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 24296559 - 24296505
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 79  Q
    ||||||||| | |||||||||  |||||||||||||||||||||| || ||||||    
T  24296559 gtatcggtgtatgatacgcagatgatacggtacgtcatccattttaaactatcgg 24296505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 36943742 - 36943708
Alignment:
Q  23 aggtatcggtgcaggatacgcaggggatacggtac 57  Q
    ||||||||||||||||||| |||||||||||||||    
T  36943742 aggtatcggtgcaggatacacaggggatacggtac 36943708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 36561771 - 36561831
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||||||||||| | ||||||||  || |||||||||||||||||||| | ||||||    
T  36561771 gtatcggtgcaggatacac-ggggatacaataagtcatccattttgaagtatcagagcttca 36561831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 3109359 - 3109423
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||||| ||| |||||||  | |||||||| || ||||||||| |||||||| |||||||    
T  3109359 caggtatcggtacagaatacgcaaagaatacggtatgtgatccattttaaagtatcgaggcttca 3109423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 7327779 - 7327709
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7327779 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 7327709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 35389817 - 35389748
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35389817 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 35389748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 22611425 - 22611497
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22611425 gggcaggtatcggtgcaggaaacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 22611497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 40497397 - 40497327
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40497397 gggcaagtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 40497327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 37996862 - 37996932
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37996862 gggcaggtctcggtgcaggatacgcaggggatacggtacgtcatccattttaaagtatcggggcttcacag 37996932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 19879144 - 19879213
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  19879144 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtattgcggcttcaca 19879213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 42464958 - 42465027
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  42464958 gggcaggtatcggtgcaggatacgcagaggatacagtacgtcatccattttgaagtatcggggcttcaca 42465027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 22310771 - 22310703
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  22310771 ggcaggtatcggtgcaggatacacaggggatacggtacgtcatccattgtgaagtatcggggcttcaca 22310703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 48122892 - 48122825
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48122892 gggcatgtatcggtgcaggatatgcaggggatacggtacgtcatccattttgaagtatcggggcttca 48122825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 53192565 - 53192498
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  53192565 gggcaggtatcggtgcaggatactcagggtatacggtacgtcatccattttgaagtatcggggcttca 53192498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 55269066 - 55269133
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  55269066 caggtatcgatgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttcacag 55269133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 1679749 - 1679819
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||    
T  1679749 gggcaggtatcggtgcaggatatgcagtggatacggtacgttatccattttgaagtatcggggcttcacag 1679819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 13748498 - 13748570
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| ||||    
T  13748498 gggcaggtatcggtgcaggatacgcagaggatacgatacgtcaaccattttgaagtatcggggcttcatagat 13748570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 52121257 - 52121177
Alignment:
Q  9 gagaagcatagggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||| || || |||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  52121257 gagaagtatcggacaggtattagtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttcacag 52121177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 6134439 - 6134505
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  6134439 gtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcagggcttcagagat 6134505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 28704790 - 28704724
Alignment:
Q  23 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  28704790 aggtatcagtgcaggatatgcaggggatacggtacgtcatccattttaaagtatcggggcttcacag 28704724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 19420961 - 19420904
Alignment:
Q  30 ggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcac 87  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19420961 ggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttcac 19420904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 22289774 - 22289839
Alignment:
Q  21 gcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  22289774 gcaggtattggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcgaggcttca 22289839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 28882736 - 28882797
Alignment:
Q  26 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcac 87  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28882736 tatcggtgcatgatacgcaggggatacggtacgtcatccattttgaagtatcggagcttcac 28882797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 47642078 - 47642017
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  47642078 gtatcggtgcaggatacgcatgggatacggtacgtcatccattttgaagtatcgaggcttca 47642017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 10225208 - 10225272
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||    
T  10225208 gtatcggtgcaggatacgcaggggatacgatacgtcatccattttaaagtatcagggcttcacag 10225272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 28968577 - 28968511
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttc 85  Q
    |||||||||||||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||    
T  28968577 gggcaggtatcggtgcaggatacgtaaaggatatggtacgtcatccattttgaagtatcggggcttc 28968511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 29915925 - 29915859
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  29915925 caggtatcggtgcatgatacgcaggggatacgatacgtcatctattttgaagtatcgggacttcaca 29915859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 29965078 - 29965012
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  29965078 caggtatcggtgcatgatacgcaggggatacgatacgtcatctattttgaagtatcgggacttcaca 29965012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 30787619 - 30787685
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    ||||| || |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  30787619 gtatcagtacaggatacgcaggggatacgatacgtcatcgattttgaagtatcggggcttcacagat 30787685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 1528569 - 1528502
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||||| |||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||    
T  1528569 gggcaggtatcgatgcatgatacgcaggggatatgatacgtcatccattttgaagtatcggagcttca 1528502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 30226487 - 30226420
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||  ||||||||    
T  30226487 gggcaggtatcggtgcaggatacgcagaggatacgataagtcatccattttgaagtatatgggcttca 30226420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 41742127 - 41742193
Alignment:
Q  23 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||| ||| ||||||  ||||||||||||||||||||||||| |||||||||    
T  41742127 aggtatcggtgcaggatacacagaggatacaatacgtcatccattttgaagtatcggcgcttcacag 41742193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 52505884 - 52505953
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||| |||||||||||||||||||||||| |||| |||| ||||||||||| |||||||||||||||||||    
T  52505884 gggccggtatcggtgcaggatacgcaggg-atacagtacatcatccatttttaagtatcggggcttcacag 52505953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 42229741 - 42229672
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||||||||||||||||||||||||||||||   ||||||||| |||||||||||| || ||||||||    
T  42229741 gggcaggtatcggtgcaggatacgcaggggatataatacgtcatctattttgaagtattggagcttcaca 42229672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 52684265 - 52684200
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcac 87  Q
    ||||||||||||||||||||||| | |||||| ||||||||| ||||||||||||||| |||||||    
T  52684265 caggtatcggtgcaggatacgcatgagatacgatacgtcatctattttgaagtatcggagcttcac 52684200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 2567444 - 2567508
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||  |||||||    
T  2567444 gtatcggtgcaggatacgcaggaaatacgatacgtcatccattttgaagtatcgggatttcacag 2567508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 49419299 - 49419245
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtat 76  Q
    ||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||    
T  49419299 caggtatcgatgcaggatacgcaagggatacgatacgtcatccattttgaagtat 49419245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 2122773 - 2122702
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcagg---ggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||| ||||||||||| ||||||||||   ||||||  ||||||||||||||||||||||||||||||||||    
T  2122773 ggcaagtatcggtgcatgatacgcaggaggggatacaatacgtcatccattttgaagtatcggggcttcaca 2122702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 21006536 - 21006605
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||||||||| |||| |||||||| | |||| | |||||||| |||||||||||||||||||||||||    
T  21006536 gggcaggtatcgatgcaagatacgcatgagatatgatacgtcattcattttgaagtatcggggcttcaca 21006605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 38889132 - 38889200
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||| |||||||||||||| || || ||||||| ||||||||||||||||||||||| |||||||||||    
T  38889132 ggcagatatcggtgcaggat-cgtagaggatacgatacgtcatccattttgaagtatcagggcttcacag 38889200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 13353237 - 13353296
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcg 78  Q
    |||||| |||||| |||||||||||||| |||||| ||||||||||||||| ||||||||    
T  13353237 gggcagatatcggcgcaggatacgcaggagatacgatacgtcatccattttaaagtatcg 13353296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 19349641 - 19349708
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    ||||||||||| ||||||| ||| |||| |||||| ||||||| ||||||||||||||||| ||||||    
T  19349641 gggcaggtatcagtgcaggttacacaggagatacgatacgtcaaccattttgaagtatcggagcttca 19349708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 33238759 - 33238720
Alignment:
Q  50 tacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33238759 tacggtacgtcatccattttgaagtatcggggcttcacag 33238720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 25937115 - 25937184
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||| |||| |||| |||||||||||| |||||| ||||||||||||||| ||||||| |||||||||||    
T  25937115 gggcatgtattggtgtaggatacgcaggagatacgatacgtcatccattttaaagtatc-gggcttcacag 25937184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 45347364 - 45347296
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||| |||||||||| |||||||||||| || |||| ||||||||||||||||| |||||||||    
T  45347364 gggcaggtatcagtgcaggata-gcaggggatacgata-gtcaaccattttgaagtatcggagcttcacag 45347296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 47750943 - 47750997
Alignment:
Q  21 gcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagta 75  Q
    |||| |||||||||||||||||||| |||||  ||||||||||||||||||||||    
T  47750943 gcagctatcggtgcaggatacgcagaggatatagtacgtcatccattttgaagta 47750997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 25700826 - 25700757
Alignment:
Q  20 ggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagat 91  Q
    |||||||||||||||||||||||||| ||||||  ||  |||||||  ||||||||||| ||||||||||||    
T  25700826 ggcaggtatcggtgcaggatacgcagaggatacaatatatcatcca--ttgaagtatcgaggcttcacagat 25700757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 20510210 - 20510265
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatc 77  Q
    ||||||||||| || |||||||| |||||||| | |||||||||||||||||||||    
T  20510210 caggtatcggtacaagatacgcacgggatacgatgcgtcatccattttgaagtatc 20510265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 5271542 - 5271489
Alignment:
Q  23 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtat 76  Q
    |||||||||| ||||||||||| ||||||| ||| |||||| ||||||||||||    
T  5271542 aggtatcggttcaggatacgcaagggatacagtatgtcatctattttgaagtat 5271489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 21157780 - 21157849
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||| ||||  |||||||| | ||| | ||||| ||||||||||||||||||||||| ||||||||||    
T  21157780 gggcagttatcaatgcaggatgcacagagaatacgatacgtcatccattttgaagtatctgggcttcaca 21157849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 7899772 - 7899837
Alignment:
Q  21 gcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||| ||| ||||||||||||| | | |||||  | |||||||||||||||||||||| |||||||    
T  7899772 gcagatataggtgcaggatacgtaagagatacatttcgtcatccattttgaagtatcgaggcttca 7899837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 983242 - 983202
Alignment:
Q  38 atacgcaggggatacggtacgtcatccattttgaagtatcg 78  Q
    |||| ||||||||||| |||||||||||||||||| |||||    
T  983242 atacacaggggatacgatacgtcatccattttgaattatcg 983202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 8143 - 8213
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8143 gggcaggtatcggtgcaggatacgcaggggatacggtacatcatccattttgaagtatcggggcttcacag 8213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 44647 - 44711
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44647 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 44711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 27835 - 27902
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27835 caggtatcggtgcaggatatgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 27902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 5579 - 5509
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  5579 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcgtccattttgaagtatcggggctttacag 5509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 42122 - 42183
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 86  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42122 gtatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcggggcttca 42183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 25587 - 25651
Alignment:
Q  25 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25587 gtatcggtgcagaatacgcaggggatacggtgcgtcatccattttgaagtatcggggcttcacag 25651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 30495 - 30565
Alignment:
Q  19 gggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    ||||||||||||||| ||||||||||||  ||||||||||| |||||||||||||||||||||||||||||    
T  30495 gggcaggtatcggtgtaggatacgcaggaaatacggtacgttatccattttgaagtatcggggcttcacag 30565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 13314 - 13252
Alignment:
Q  22 caggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggctt 84  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||    
T  13314 caggtatcggtgcaggatacgcaggagatacgatacgtcatccattttgaagtatcggagctt 13252  T

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Target: scaffold0240 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 10677 - 10598
Alignment:
Q  9 gagaagcatagggcaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcaca 88  Q
    |||||| || ||||| ||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||| ||||||||||    
T  10677 gagaagtatcgggcaagtatcggtgcatgatacgcaggggatatggtacatcatccattttaaagtatctgggcttcaca 10598  T

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Target: scaffold0406 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 13921 - 13863
Alignment:
Q  31 gtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacag 89  Q
    |||||||||||||||  ||||| ||||||||||||||||||||||||||| ||||||||    
T  13921 gtgcaggatacgcagatgatacagtacgtcatccattttgaagtatcgggacttcacag 13863  T

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