View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9779_high_48 (Length: 238)
Name: NF9779_high_48
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_high_48 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 19307173 - 19306951
Alignment:
| Q |
1 |
ttttttgttgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggctcctgttagtgtgctgtc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
19307173 |
ttttttgctgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaatcacttagtagtgttattttggatcctgttagtgtgctgtc |
19307074 |
T |
|
| Q |
101 |
ttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttccccatggtgggtattttttggggtttgtcccannnnnnncctgctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
19307073 |
ttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttccccatggtgggtattttttggggtttgtcccatttttttcctgctg |
19306974 |
T |
|
| Q |
201 |
aattatagtagtagtgttatagc |
223 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
19306973 |
aattatagcagtagtgttatagc |
19306951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10123745 - 10123523
Alignment:
| Q |
1 |
ttttttgttgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggctcctgttagtgtgctgtc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
10123745 |
ttttttgctgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggatcctgttagtgtgctgtc |
10123646 |
T |
|
| Q |
101 |
ttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttccccatggtgggtattttttggggtttgtcccannnnnnncctgctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
10123645 |
ttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatggtgggtattttttgcggtttgtcccatttttttcctgctg |
10123546 |
T |
|
| Q |
201 |
aattatagtagtagtgttatagc |
223 |
Q |
| |
|
|||||||| |||||| ||||||| |
|
|
| T |
10123545 |
aattatagcagtagttttatagc |
10123523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25382668 - 25382889
Alignment:
| Q |
1 |
ttttttgttgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggctcctgttagtgtgctgtc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25382668 |
ttttttgctgttcaggcgcggttttttagagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggctcctgttagtgtgctgtc |
25382767 |
T |
|
| Q |
101 |
ttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttccccatggtgggtattttttggggtttgtcccannnnnnncctgctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
25382768 |
ttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttccccatggtgggtattttttggggtttgtccca-ttttttcctgctg |
25382866 |
T |
|
| Q |
201 |
aattatagtagtagtgttatagc |
223 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
25382867 |
aattatagcagtagtgttatagc |
25382889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28245518 - 28245296
Alignment:
| Q |
1 |
ttttttgttgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggctcctgttagtgtgctgtc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
28245518 |
ttttttgctgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtaatgttattttggatcctgttagtgtgctgtc |
28245419 |
T |
|
| Q |
101 |
ttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttccccatggtgggtattttttggggtttgtcccannnnnnncctgctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28245418 |
ttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatggtgggtattttttggggtttgtcccatttttttcctgctg |
28245319 |
T |
|
| Q |
201 |
aattatagtagtagtgttatagc |
223 |
Q |
| |
|
|||||||| |||||| ||||||| |
|
|
| T |
28245318 |
aattatagcagtagttttatagc |
28245296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 83 - 208
Target Start/End: Original strand, 11474694 - 11474819
Alignment:
| Q |
83 |
tcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttccccatggtgggtattttttggggtttgt |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11474694 |
tcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatgttgggtattttttggggtttgt |
11474793 |
T |
|
| Q |
183 |
cccannnnnnncctgctgaattatag |
208 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
11474794 |
cccatttttttcctgctgaattatag |
11474819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 83 - 208
Target Start/End: Original strand, 11502734 - 11502859
Alignment:
| Q |
83 |
tcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttccccatggtgggtattttttggggtttgt |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11502734 |
tcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatgttgggtattttttggggtttgt |
11502833 |
T |
|
| Q |
183 |
cccannnnnnncctgctgaattatag |
208 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
11502834 |
cccatttttttcctgctgaattatag |
11502859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 11474512 - 11474590
Alignment:
| Q |
1 |
ttttttgttgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttatttt |
79 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11474512 |
ttttttgctgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtaatgttatttt |
11474590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 38252354 - 38252147
Alignment:
| Q |
1 |
ttttttgttgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggctcctgttagtgtgctgtc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
38252354 |
ttttttgctgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtaatgttattttggatcctgttagtgtgctgtc |
38252255 |
T |
|
| Q |
101 |
ttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttccccatggtgggtattttttggggtttgtcccannnnnnncctgctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38252254 |
ttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatggtgggtattttttggggtttgtcccatttttttcctgctg |
38252155 |
T |
|
| Q |
201 |
aattatag |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
38252154 |
aattatag |
38252147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 43157188 - 43157395
Alignment:
| Q |
1 |
ttttttgttgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggctcctgttagtgtgctgtc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
43157188 |
ttttttgctgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtaatgttattttggatcctgttagtgtgctgtc |
43157287 |
T |
|
| Q |
101 |
ttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttccccatggtgggtattttttggggtttgtcccannnnnnncctgctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
43157288 |
ttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatgttgggtattttttggggtttgtcccatttttttcctgctg |
43157387 |
T |
|
| Q |
201 |
aattatag |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
43157388 |
aattatag |
43157395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 22490758 - 22490537
Alignment:
| Q |
1 |
ttttttgttgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggctcctgttagtgtgctgtc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
22490758 |
ttttttgctgttcaggcgcggttttttggagcataggaactgtgtttttgctgttaaaaccacttagtagtgttattttggctgctgttagtgtgatgtc |
22490659 |
T |
|
| Q |
101 |
ttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttccccatggtgggtattttttggggtttgtcccannnnnnncctgctg |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22490658 |
ttaggattgtgcagccacacctctactaagttgttatagcagcagctttggttccccatggtgggtattttttggggtttgtccca-ttttttcctgctg |
22490560 |
T |
|
| Q |
201 |
aattatagtagtagtgttatagc |
223 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
22490559 |
aattatagcagtagtgttatagc |
22490537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 48794515 - 48794634
Alignment:
| Q |
21 |
gttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggctcctgttagtgtgctgtcttaggattgtgcagccacac |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| | |
|
|
| T |
48794515 |
gttttttggagcatgggaactgtgtttttgctattaaaaccacttagtagtgttattttggcttctgttaatgtgctgtcttaggattgtgcagccacgc |
48794614 |
T |
|
| Q |
121 |
ctctgctaagttgttatagc |
140 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
48794615 |
ctctgctaagttgttatagc |
48794634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 48795375 - 48795460
Alignment:
| Q |
133 |
gttatagcagcagctttagttccccatggtgggtattttttggggtttgtcccannnnnnncctgctgaattatagtagtagtgtt |
218 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
48795375 |
gttatagcatcagatttagttccccatggtgggtattttttggggtttgtcccatttttttcctactgaattatagcagtagtgtt |
48795460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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