View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_high_49 (Length: 236)
Name: NF9779_high_49
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_high_49 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1276626 - 1276846
Alignment:
| Q |
1 |
actattttcatcaaccaagagcaagaaatgtattatgaagaatcagatagaccggctcatgcgcggacatctaatttgaatgaagaacttggtcaagttg |
100 |
Q |
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| T |
1276626 |
actattttcatcaaccaagatcaagaaatgtattatgaagaatcagataggccggctcatgcgcggacatctaatttgaatgaagaacttggtcaagttg |
1276725 |
T |
|
| Q |
101 |
ataccatattgtctgacaagaccggtacgttgacatgtaactccatggagtttgtcaaatgttcaatagggggtgttcagtatggccgtggtattacgga |
200 |
Q |
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| T |
1276726 |
ataccatattgtctgacaagaccggtacgttgacatgtaactccatggagtttgtcaaatgttcaatagggggtgttcagtatggccgtggtattacgga |
1276825 |
T |
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| Q |
201 |
agtggagaaggcacttgctag |
221 |
Q |
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| T |
1276826 |
agtggagaaggcacttgctag |
1276846 |
T |
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Back To:
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 177
Target Start/End: Complemental strand, 46052638 - 46052519
Alignment:
| Q |
58 |
catgcgcggacatctaatttgaatgaagaacttggtcaagttgataccatattgtctgacaagaccggtacgttgacatgtaactccatggagtttgtca |
157 |
Q |
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| T |
46052638 |
catgctcgtacatcgaatttgaacgaagaacttggtcaagttgataccatactttctgataaaacaggaacattgacttgcaattctatggaatttatca |
46052539 |
T |
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| Q |
158 |
aatgttcaatagggggtgtt |
177 |
Q |
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| T |
46052538 |
agtgttctattggtggtgtt |
46052519 |
T |
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