View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_high_5 (Length: 513)
Name: NF9779_high_5
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 12690571 - 12690833
Alignment:
| Q |
18 |
atttgatggggttgtgtagcatagcactctttcaatccaatcaatgttaacgtccatgtatgaagtaacgatcactatgatgcatttttgcatgtactaa |
117 |
Q |
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| T |
12690571 |
atttgatggggttgtgtagcgtagcactctttcaatccaatcaatgttaacgtccatgtatgaagtaacgatcactatgatgcatttttgcatgtactga |
12690670 |
T |
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| Q |
118 |
aagagtccatgtagacaaacatcgtgacaattgttactttagacgatgatgtcataactggtgtgattgaaagagtcatatgtggtctaagagaggatat |
217 |
Q |
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| T |
12690671 |
aagagtccatgtagacaaacatcgtgacaactgttactttagacgatgatgtcataactggtgtgattgaaagagtcatatgtggtctaagagaggatat |
12690770 |
T |
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| Q |
218 |
tatagttggaatcattgttgctaaagagatttctaatatataatcattaaatcttaactttca |
280 |
Q |
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| T |
12690771 |
tatagttggaatcattgttgctaaagagatttctaatatataatcattaaatcttaactttca |
12690833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 324 - 506
Target Start/End: Original strand, 12690818 - 12691000
Alignment:
| Q |
324 |
taaatcttaactttcatatatataatcattaccaatgaactcaaacatgtaactcctcgacgaaggtgaggtcgttatcgcaactttattttctctcggt |
423 |
Q |
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| T |
12690818 |
taaatcttaactttcatatatataatcattaccaatgaactcaaacatgtaactcctcgacgaaggtgaggtcgttatcgcaactttattttctctcggt |
12690917 |
T |
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| Q |
424 |
gtataagagtattatacaaggattttccacccgaggcaactcacctcgttcatctccaaaatcaacaatgtcgatgatgtcca |
506 |
Q |
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| T |
12690918 |
gtataagagtattatacaaggattttccacccgaggcaactcacctcgttcatctccaaaatcaacaatgtcgatgatgtcca |
12691000 |
T |
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