View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_high_50 (Length: 234)
Name: NF9779_high_50
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_high_50 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 31160865 - 31160634
Alignment:
| Q |
1 |
cttgctttgtggttttaacgcttacatttttgtgataacatgatgtaacatatacttttcttccttagttcttatctaatacttcttgttcttgagagac |
100 |
Q |
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| T |
31160865 |
cttgctttgtggttttaacgcttacatttttgtgataacgtgatgtaacatatacttttcttccttagttcttatctaatacttcttgttcttgagagac |
31160766 |
T |
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| Q |
101 |
taagttttgggttgatatattctattttaacttcttcaaagnnnnnnnnnttaaggtatgtaatttaattttttgttggtcaactttgnnnnnnnnnnag |
200 |
Q |
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| T |
31160765 |
taagttttgggttgatatattctattttaacttcttcaaa--aaaaaaaattaaggtatgtaatttaattttttgttggtcaactttgttttttttttag |
31160668 |
T |
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| Q |
201 |
tcaagtagtctagtaggtagaattcacctcttaa |
234 |
Q |
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|||| |||||| |||||||||||||| ||||||| |
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| T |
31160667 |
tcaaatagtctggtaggtagaattcatctcttaa |
31160634 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 13334812 - 13334885
Alignment:
| Q |
36 |
taacatgatgtaacatatacttttcttccttagttcttatctaatacttcttgttcttgagagactaagttttg |
109 |
Q |
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| T |
13334812 |
taacatgatgtaactaatatttttcttccttagtttttctctaacacttcttgtgttggagagactaagttttg |
13334885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 135
Target Start/End: Original strand, 52162963 - 52163055
Alignment:
| Q |
41 |
tgatgtaacatatacttttcttccttagttcttatctaatacttcttgttcttgagagactaagttttgggttgatatattctattttaacttct |
135 |
Q |
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| T |
52162963 |
tgatgtaacatatacttgtcttccttaattctcttctgacattccttgtgcttgagagactaacttttgg--ttatatattctattttatcttct |
52163055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 42976576 - 42976605
Alignment:
| Q |
200 |
gtcaagtagtctagtaggtagaattcacct |
229 |
Q |
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| T |
42976576 |
gtcaagtagtctagtaggtagaattcacct |
42976605 |
T |
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