View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_high_53 (Length: 220)
Name: NF9779_high_53
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_high_53 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 46616236 - 46616105
Alignment:
| Q |
14 |
cagagaaacgtgaataatattttgtgttgtgtttttaacctttgaatttgagcaagaaacgctggttcggttgaatgctaagtaaggttttgttttcaaa |
113 |
Q |
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| T |
46616236 |
cagagaaacgtgaataatattttgtgttgtgtttttaacctttgaatttgagcaagaaacgctggttcggttgaatgctaagtaaggttttgttttcaaa |
46616137 |
T |
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| Q |
114 |
gggtaataagcatcaaagaccaagtatgcata |
145 |
Q |
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| T |
46616136 |
gggtaataagcatcaaagaccaagtatgcata |
46616105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 46645145 - 46645229
Alignment:
| Q |
34 |
tttgtgttgtgtttttaacctttgaatttgagcaagaaacgctg----gttcggttgaatgctaagtaaggttttgttttcaaag |
114 |
Q |
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| T |
46645145 |
tttgtgtagtgatgttaacctttgagtttgagaaagaaacgttgaatcggttggttgaatgctaagtaaggttttgttttcaaag |
46645229 |
T |
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