View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9779_high_8 (Length: 465)

Name: NF9779_high_8
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9779_high_8
NF9779_high_8
[»] chr4 (1 HSPs)
chr4 (16-465)||(51506873-51507322)


Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 16 - 465
Target Start/End: Original strand, 51506873 - 51507322
Alignment:
Q  16 acatcaagctgaattccagttacatttggaatgccttcaacaatctgcactgatctaatatcaaatctaggatccttaggaagatactagttctgcttcc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  51506873 acatcaagctgaattccagttacatttggaatgccttcaacaatctgcactgatctaatatcaaatctaggatccttaggaaaataccagttctgcttcc 51506972  T
Q  116 atagaagaagaactaatgacaagcaaaagttttggtcaaaatacctgctctgcatccttcaggtacaaagatcccaaaataacatcaacatctatttgat 215  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  51506973 atagaagaagaactaacgacaagcaaaagttttgttcaaaatacctgctctgcatccttcaggtacaaagatcccaaaatgacatcaacatctatttgat 51507072  T
Q  216 cttcaaaatcatcttccaacaatgttttataccattggctggatccaaatgatgataacatttgagcagctggctgacagactcgaccagccccaagaat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51507073 cttcaaaatcatcttccaacaatgttttataccattggctggacccaaatgatgataacatttgagcagctggctgacagactcgaccagccccaagaat 51507172  T
Q  316 caaaactgcagccttcttttttggatcagattccttctccatgccgttctcttgaactttaccaagcgtaagtgaaattttacttgaattttgatttgaa 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  51507173 caaaactgcagccttcttttttggatcagattccttctccatgccgttctcttgaactttaccaagcgttagtgaaattttacttgaattttgatttgaa 51507272  T
Q  416 aatctattattttcagttggattagcaagagaggttaaagaatcaatgat 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51507273 aatctattattttcagttggattagcaagagaggttaaagaatcaatgat 51507322  T

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