View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_1 (Length: 682)
Name: NF9779_low_1
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 290 - 622
Target Start/End: Complemental strand, 4188260 - 4187928
Alignment:
| Q |
290 |
ggattgagttattatggaatgtaacgtgtggactgtattttgttgattgcagttctctataaaggcataataccgatagtggagaatagaagaggtgtgt |
389 |
Q |
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| T |
4188260 |
ggattgagtgagtatggaatgtaacgtgtggactgtattttgttgattccagttctctaaaaaggcataataccgatagtggagaatagaagaggtttgt |
4188161 |
T |
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| Q |
390 |
ggacacacatctttggccacattgttcaatttttacagaatataatctttatgcacaatttgtcnnnnnnnntaatctttatgcataagtaacaaacaag |
489 |
Q |
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| T |
4188160 |
ggacacacatctttggccacattgttcaatttttacagaatataatctttatgcacaatttgttaaaaaaaataatctttatgcataagtaacaaacaag |
4188061 |
T |
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| Q |
490 |
catttaaatttttctacattataacaatagacattcgattatgccaaaagttaaaagaatatattcatttatgatcataatatacaaagagaatgcagta |
589 |
Q |
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| T |
4188060 |
catttaaatttttctacattataacaatagacattcgattatgccaaaagttaaaagaatatattcatttatgatcataatatacaaagagactgcagta |
4187961 |
T |
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| Q |
590 |
acagtaccacaccaaataaagcattagattcta |
622 |
Q |
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| T |
4187960 |
acagtaccacaccaaataaagcattagattcta |
4187928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 4188540 - 4188313
Alignment:
| Q |
10 |
agaagcaaaggttaaaggagaaaccgaacgacttgtggtggaagaatataaagatgacatcggtgggtcttttattgcaccaaatcaaccaaatagaaag |
109 |
Q |
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| T |
4188540 |
agaagaaaaggttaaaggagaaaccgaacgacttgtggtggaagaatacaaagatgacatcggtgggtcttttattgcaccaaatcaaccaaatagaaag |
4188441 |
T |
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| Q |
110 |
tgacatgcacatggtctctctatgtcttacaatgttatgttaactcagatattataagcttaatgaacacatttgactgcaaatatcccatttccgacac |
209 |
Q |
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| T |
4188440 |
tgacatgcacatggtctctctatgtcttacaatgttatgttaactcagatattataagcttaatgaacacatttgaatgcaaatatcccatttccgacac |
4188341 |
T |
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| Q |
210 |
atcactatggttgatttagaagaagtgg |
237 |
Q |
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| T |
4188340 |
atcactatggttgatttagaagaagtgg |
4188313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 614 - 646
Target Start/End: Complemental strand, 4186752 - 4186720
Alignment:
| Q |
614 |
tagattctatcacaattcacaatgagttgtata |
646 |
Q |
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| T |
4186752 |
tagattctatcacaattcacaatgacttgtata |
4186720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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