View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9779_low_10 (Length: 465)
Name: NF9779_low_10
Description: NF9779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9779_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 16 - 465
Target Start/End: Original strand, 51506873 - 51507322
Alignment:
| Q |
16 |
acatcaagctgaattccagttacatttggaatgccttcaacaatctgcactgatctaatatcaaatctaggatccttaggaagatactagttctgcttcc |
115 |
Q |
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| T |
51506873 |
acatcaagctgaattccagttacatttggaatgccttcaacaatctgcactgatctaatatcaaatctaggatccttaggaaaataccagttctgcttcc |
51506972 |
T |
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| Q |
116 |
atagaagaagaactaatgacaagcaaaagttttggtcaaaatacctgctctgcatccttcaggtacaaagatcccaaaataacatcaacatctatttgat |
215 |
Q |
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| T |
51506973 |
atagaagaagaactaacgacaagcaaaagttttgttcaaaatacctgctctgcatccttcaggtacaaagatcccaaaatgacatcaacatctatttgat |
51507072 |
T |
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| Q |
216 |
cttcaaaatcatcttccaacaatgttttataccattggctggatccaaatgatgataacatttgagcagctggctgacagactcgaccagccccaagaat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51507073 |
cttcaaaatcatcttccaacaatgttttataccattggctggacccaaatgatgataacatttgagcagctggctgacagactcgaccagccccaagaat |
51507172 |
T |
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| Q |
316 |
caaaactgcagccttcttttttggatcagattccttctccatgccgttctcttgaactttaccaagcgtaagtgaaattttacttgaattttgatttgaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
51507173 |
caaaactgcagccttcttttttggatcagattccttctccatgccgttctcttgaactttaccaagcgttagtgaaattttacttgaattttgatttgaa |
51507272 |
T |
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| Q |
416 |
aatctattattttcagttggattagcaagagaggttaaagaatcaatgat |
465 |
Q |
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| T |
51507273 |
aatctattattttcagttggattagcaagagaggttaaagaatcaatgat |
51507322 |
T |
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